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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1b2rFADFerredoxin--NADP reductase1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1b2rFADFerredoxin--NADP reductase1.18.1.21.000
1h85FADFerredoxin--NADP reductase1.18.1.20.852
1qgyFADFerredoxin--NADP reductase1.18.1.20.842
1go2FADFerredoxin--NADP reductase1.18.1.20.822
1qh0FADFerredoxin--NADP reductase1.18.1.20.794
1e64FADFerredoxin--NADP reductase1.18.1.20.727
1bjkFADFerredoxin--NADP reductase1.18.1.20.675
4c43FADFerredoxin--NADP reductase1.18.1.20.632
3zc3FADFerredoxin--NADP reductase1.18.1.20.604
2b5oFADFerredoxin--NADP reductase1.18.1.20.600
3zbtFADFerredoxin--NADP reductase1.18.1.20.599
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.583
4bprFADFerredoxin--NADP reductase1.18.1.20.582
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.577
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.576
3w5uFADFerredoxin/0.576
1gjrFADFerredoxin--NADP reductase1.18.1.20.575
1ewyFADFerredoxin--NADP reductase1.18.1.20.573
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.569
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.568
1w87FADFerredoxin--NADP reductase1.18.1.20.559
1e63FADFerredoxin--NADP reductase1.18.1.20.555
1sm4FADFerredoxin--NADP reductase/0.552
1qgzFADFerredoxin--NADP reductase1.18.1.20.545
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.545
3vo2FADFerredoxin--NADP reductase/0.545
1queFADFerredoxin--NADP reductase1.18.1.20.541
1gvhFADFlavohemoprotein/0.538
1ogiFADFerredoxin--NADP reductase1.18.1.20.534
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.534
3qfsFADNADPH--cytochrome P450 reductase/0.534
1gawFADFerredoxin/0.532
1h42FADFerredoxin--NADP reductase1.18.1.20.531
2rc6FADFerredoxin--NADP reductase/0.528
4y9uFADNADPH--cytochrome P450 reductase/0.527
1gaqFADFerredoxin/0.522
1e62FADFerredoxin--NADP reductase1.18.1.20.520
1gr1FADFerredoxin--NADP reductase1.18.1.20.515
1amoFADNADPH--cytochrome P450 reductase/0.514
2ok8FADFerredoxin--NADP reductase, apicoplast/0.512
3fpkFADFerredoxin-NADP reductase/0.512
1w35FADFerredoxin--NADP reductase1.18.1.20.508
1ja1FADNADPH--cytochrome P450 reductase/0.506
1ogjFADFerredoxin--NADP reductase1.18.1.20.504
4y9rFADNADPH--cytochrome P450 reductase/0.497
3ojxFADNADPH--cytochrome P450 reductase/0.495
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.493
3qftFADNADPH--cytochrome P450 reductase/0.492
1j9zFADNADPH--cytochrome P450 reductase/0.488
1tllFADNitric oxide synthase, brain1.14.13.390.481
3qfcFADNADPH--cytochrome P450 reductase/0.479
4yafFADNADPH--cytochrome P450 reductase/0.478
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.477
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.476
2bpoFADNADPH--cytochrome P450 reductase/0.475
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.475
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.475
4yaoFADNADPH--cytochrome P450 reductase/0.475
1f20FADNitric oxide synthase, brain1.14.13.390.470
3gwfFADCyclohexanone monooxygenase/0.469
2piaFMNPhthalate dioxygenase reductase/0.468
2vnjFADNADPH:ferredoxin reductase/0.468
2z7hGG3Geranylgeranyl pyrophosphate synthase/0.468
3fznD7KBenzoylformate decarboxylase4.1.1.70.467
1fdrFADFerredoxin--NADP reductase1.18.1.20.466
4j7gTRHPCZA361.3/0.465
1a8pFADFerredoxin--NADP reductase/0.463
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.463
2w6zL21Biotin carboxylase6.3.4.140.462
4j7hTRHPCZA361.3/0.462
4k1xFADNADPH:ferredoxin reductase/0.461
1pr6XYAPurine nucleoside phosphorylase DeoD-type/0.460
3q9bB3NAcetylpolyamine amidohydrolase/0.460
4fk8FADFerredoxin--NADP reductase/0.460
4wqmFADToluene-4-monooxygenase electron transfer component1.18.1.30.460
1x1bSAHC-20 methyltransferase/0.458
2ejzSAHDiphthine synthase/0.457
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.456
2watCOAFatty acid synthase subunit alpha2.3.1.860.456
4b65FADL-ornithine N(5)-monooxygenase/0.456
1ri1GTGmRNA cap guanine-N7 methyltransferase2.1.1.560.455
2bgjFADNADPH:ferredoxin reductase/0.454
3pqbVGPPutative oxidoreductase/0.454
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.453
2vnkFADNADPH:ferredoxin reductase/0.452
1r58AO5Methionine aminopeptidase 2/0.451
2rc5FADFerredoxin--NADP reductase/0.451
3ihgVAKAklavinone 12-hydroxylase RdmE/0.451
4b4w9L9Bifunctional protein FolD/0.451
2ivpATPtRNA N6-adenosine threonylcarbamoyltransferase/0.450
5ah5LSSLeucine--tRNA ligase/0.450
1cqxFADFlavohemoprotein/0.449
1h63FMNPentaerythritol tetranitrate reductase/0.449
2bgiFADNADPH:ferredoxin reductase/0.449
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.449
3e6eDCSAlanine racemase/0.449
4kfqKFQGlutamate receptor ionotropic, NMDA 1/0.449
1hzzNAPNAD(P) transhydrogenase subunit beta1.6.1.20.448
1icsFMN12-oxophytodienoate reductase 11.3.1.420.447
3wqtANPCell division protein FtsA/0.447
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.446
2ylrFADPhenylacetone monooxygenase1.14.13.920.446
3vt7VDXVitamin D3 receptor/0.446
4bfxZVXPantothenate kinase2.7.1.330.446
2vf3GVS4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.445
4bfuZVUPantothenate kinase2.7.1.330.445
2xysSY9Soluble acetylcholine receptor/0.444
3eksCY9Actin-5C/0.444
3ojwFMNNADPH--cytochrome P450 reductase/0.444
4a86H35Major pollen allergen Bet v 1-A/0.444
4mo2FADUDP-galactopyranose mutase/0.444
1mczRMNBenzoylformate decarboxylase4.1.1.70.443
2vnhFADNADPH:ferredoxin reductase/0.443
3rbaCODPhosphopantetheine adenylyltransferase/0.443
2gevCOKPantothenate kinase2.7.1.330.442
2wzySQXSoluble acetylcholine receptor/0.442
2xnvVU3Soluble acetylcholine receptor/0.442
3n0bFADFlavin-dependent thymidylate synthase2.1.1.1480.442
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.442
1lkeDOGBilin-binding protein/0.441
3vt9YI4Vitamin D3 receptor/0.441
4df2FMNNADPH dehydrogenase/0.441
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.440
3br3ETHTH-type transcriptional regulator QacR/0.440
3rupADPBiotin carboxylase6.3.4.140.440
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.440
4mv1ADPBiotin carboxylase6.3.4.140.440