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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ez4 NAD Betaine-aldehyde dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ez4 NADBetaine-aldehyde dehydrogenase / 1.113
5eyu NADBetaine-aldehyde dehydrogenase / 1.065
5dib NADBetaine-aldehyde dehydrogenase / 0.945
4wb9 NAIRetinal dehydrogenase 1 1.2.1.36 0.761
4x4l NAIRetinal dehydrogenase 1 1.2.1.36 0.750
1nzz NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.741
1bxs NADRetinal dehydrogenase 1 1.2.1.36 0.738
4i9b NADPutative betaine aldehyde dehyrogenase / 0.731
1o02 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.705
4oe2 NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.705
4pxl NADAldehyde dehydrogenase3 / 0.705
2onm NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.698
3iwj NADAminoaldehyde dehydrogenase / 0.692
1o01 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.691
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.689
2xdr NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.682
2onp NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.679
4fr8 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.679
4itb NDPSuccinate-semialdehyde dehydrogenase / 0.678
1cw3 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.677
4i1w NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.677
4nmj NAPAldehyde dehydrogenase / 0.677
4zuk NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.675
4pz2 NADAldehyde dehydrogenase 2-6 / 0.674
1nzw NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.673
4h73 NDPAldehyde dehydrogenase / 0.673
2bhp NAD1-pyrroline-5-carboxylate dehydrogenase / 0.670
2onm ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.669
2w8r ADPSuccinate-semialdehyde dehydrogenase, mitochondrial 1.2.1.24 0.666
3haz NADBifunctional protein PutA / 0.661
1uxu NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.656
3b4w NADAldehyde dehydrogenase family protein / 0.655
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.652
1wnb NAIGamma-aminobutyraldehyde dehydrogenase 1.2.1.19 0.651