sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5b1y | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 5b1y | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 1.100 | |
| 3rku | NAP | NADP-dependent 3-hydroxy acid dehydrogenase | / | 0.844 | |
| 1edo | NAP | 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic | 1.1.1.100 | 0.821 | |
| 2gdz | NAD | 15-hydroxyprostaglandin dehydrogenase [NAD(+)] | 1.1.1.141 | 0.806 | |
| 3sju | NDP | Keto reductase | / | 0.795 | |
| 1xg5 | NAP | Dehydrogenase/reductase SDR family member 11 | / | 0.787 | |
| 2bd0 | NAP | Sepiapterin reductase | / | 0.782 | |
| 1e3w | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.773 | |
| 4hwk | NAP | Sepiapterin reductase | 1.1.1.153 | 0.771 | |
| 2wsb | NAD | Galactitol dehydrogenase | / | 0.766 | |
| 3p19 | NDP | Putative blue fluorescent protein | / | 0.766 | |
| 4fj2 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.766 | |
| 4j7u | NAP | Sepiapterin reductase | 1.1.1.153 | 0.762 | |
| 3s55 | NAD | Putative short-chain dehydrogenase/reductase | / | 0.758 | |
| 4fj1 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.758 | |
| 3sx2 | NAD | Uncharacterized protein | / | 0.753 | |
| 1vl8 | NAP | Oxidoreductase, short chain dehydrogenase/reductase family | / | 0.750 | |
| 2o23 | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.750 | |
| 3l77 | NJP | Short-chain alcohol dehydrogenase | / | 0.750 | |
| 1oaa | NAP | Sepiapterin reductase | 1.1.1.153 | 0.748 | |
| 2jah | NDP | Clavaldehyde dehydrogenase | / | 0.748 | |
| 1nff | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.746 | |
| 4fj0 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.745 | |
| 1nfr | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.744 | |
| 1pr9 | NAP | L-xylulose reductase | 1.1.1.10 | 0.738 | |
| 4iqg | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.738 | |
| 1w4z | NAP | Putative ketoacyl reductase | 1.3.1 | 0.737 | |
| 4qec | NAP | ElxO | / | 0.736 | |
| 3qwf | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.735 | |
| 4fn4 | NAD | Short chain dehydrogenase | / | 0.735 | |
| 1xse | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.733 | |
| 1x7g | NAP | Putative ketoacyl reductase | 1.3.1 | 0.732 | |
| 5jla | NAD | Putative short-chain dehydrogenase/reductase | / | 0.732 | |
| 1h5q | NAP | NADP-dependent mannitol dehydrogenase | 1.1.1.138 | 0.729 | |
| 3wds | NAD | NADH-dependent quinuclidinone reductase | / | 0.729 | |
| 3w8f | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.726 | |
| 2ekp | NAD | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.725 | |
| 2nnl | NAP | Dihydroflavonol 4-reductase | 1.1.1.219 | 0.725 | |
| 2dkn | NAI | 3-alpha-hydroxysteroid dehydrogenase | / | 0.723 | |
| 3pgx | NAD | Uncharacterized NAD-dependent oxidoreductase MAP_4146 | / | 0.723 | |
| 4nbt | NAD | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.723 | |
| 4kwh | NAP | Reductase homolog | / | 0.722 | |
| 3gy0 | NAP | NAD(P)-dependent oxidoreductase | / | 0.721 | |
| 3w8d | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.721 | |
| 2q2v | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.719 | |
| 3bhi | NAP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.717 | |
| 3o26 | NDP | Salutaridine reductase | / | 0.716 | |
| 4wec | NAD | Short chain dehydrogenase | / | 0.716 | |
| 3iah | NAP | Putative oxoacyl-(Acyl carrier protein) reductase | / | 0.711 | |
| 4yag | NAI | C alpha-dehydrogenase | / | 0.711 | |
| 3w8e | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.710 | |
| 1fdu | NAP | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.709 | |
| 4bmv | NAP | Short-chain dehydrogenase | / | 0.709 | |
| 1x7h | NDP | Putative ketoacyl reductase | 1.3.1 | 0.707 | |
| 1cyd | NDP | Carbonyl reductase [NADPH] 2 | 1.1.1.184 | 0.706 | |
| 3a28 | NAD | L-2,3-butanediol dehydrogenase | 1.1.1.76 | 0.706 | |
| 3d3w | NAP | L-xylulose reductase | 1.1.1.10 | 0.706 | |
| 3tn7 | NJP | Short-chain alcohol dehydrogenase | / | 0.706 | |
| 2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.705 | |
| 4dc0 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.705 | |
| 4j7x | NAP | Sepiapterin reductase | 1.1.1.153 | 0.705 | |
| 1geg | NAD | Diacetyl reductase [(S)-acetoin forming] | 1.1.1.304 | 0.704 | |
| 4cql | NAD | Estradiol 17-beta-dehydrogenase 8 | 1.1.1.62 | 0.703 | |
| 3ak4 | NAD | NADH-dependent quinuclidinone reductase | / | 0.702 | |
| 1bdb | NAD | Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | / | 0.701 | |
| 2rbe | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.700 | |
| 3qrw | NDP | Putative ketoacyl reductase | 1.3.1 | 0.699 | |
| 4is3 | NAD | 3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 | 1.17.98.1 | 0.699 | |
| 1ipe | NDP | Tropinone reductase 2 | 1.1.1.236 | 0.698 | |
| 1e3s | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.696 | |
| 4qed | NAP | ElxO | / | 0.696 | |
| 2d1y | NAD | Oxidoreductase, short-chain dehydrogenase/reductase family | / | 0.695 | |
| 3nug | NAD | Pyridoxal 4-dehydrogenase | 1.1.1.107 | 0.693 | |
| 4yai | NAI | C alpha-dehydrogenase | / | 0.693 | |
| 2x6t | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.692 | |
| 4z3d | NDP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.692 | |
| 4bms | NAP | Alclohol dehydrogenase/short-chain dehydrogenase | / | 0.691 | |
| 4dc1 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.691 | |
| 4i5e | NAP | Alclohol dehydrogenase/short-chain dehydrogenase | / | 0.691 | |
| 2yut | NAP | Putative short-chain oxidoreductase | / | 0.690 | |
| 1b14 | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.688 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.688 | |
| 2ztv | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.688 | |
| 4bqp | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.688 | |
| 5d2e | NAP | MlnE | / | 0.688 | |
| 3mje | NDP | AmphB | / | 0.686 | |
| 4gh5 | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.686 | |
| 4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.686 | |
| 4pvd | NDP | NADPH-dependent methylglyoxal reductase GRE2 | / | 0.685 | |
| 2ggs | NDP | dTDP-4-dehydrorhamnose reductase | / | 0.684 | |
| 1kvr | NAD | UDP-glucose 4-epimerase | 5.1.3.2 | 0.683 | |
| 4u7w | NDP | MxaA | / | 0.683 | |
| 5idw | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.683 | |
| 1sny | NAP | LD36273p | / | 0.682 | |
| 3lu1 | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.682 | |
| 3rj9 | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.682 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.682 | |
| 1qyv | NAP | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.681 | |
| 3ruc | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.681 | |
| 4ej0 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.681 | |
| 5cpb | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.681 | |
| 2p5y | NAD | UDP-glucose 4-epimerase | / | 0.680 | |
| 2y99 | NAD | Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | 1.3.1.56 | 0.680 | |
| 4dmm | NAP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.680 | |
| 3ruh | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.679 | |
| 2q1t | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.678 | |
| 4b79 | NAD | Probable short-chain dehydrogenase | / | 0.678 | |
| 1g0n | NDP | Tetrahydroxynaphthalene reductase | 1.1.1.252 | 0.677 | |
| 2ntj | P1H | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.674 | |
| 2x86 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.673 | |
| 2bgm | NAJ | Secoisolariciresinol dehydrogenase | 1.1.1.331 | 0.672 | |
| 2dte | NAI | Glucose 1-dehydrogenase related protein | / | 0.672 | |
| 1enz | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.670 | |
| 3vdq | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.670 | |
| 4k6f | NAP | Putative Acetoacetyl-CoA reductase | / | 0.670 | |
| 3ai2 | NDP | NADPH-sorbose reductase | / | 0.669 | |
| 3ijr | NAD | Oxidoreductase, short chain dehydrogenase/reductase family | / | 0.669 | |
| 3sxp | NAD | ADP-L-glycero-D-mannoheptose-6-epimerase | / | 0.668 | |
| 3uic | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.668 | |
| 4dre | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.668 | |
| 3o4r | NAP | Dehydrogenase/reductase SDR family member 4 | 1.1.1.184 | 0.667 | |
| 4dqu | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.666 | |
| 2c59 | NAD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.665 | |
| 2wdz | NAD | Galactitol dehydrogenase | / | 0.665 | |
| 2ydx | NAP | Methionine adenosyltransferase 2 subunit beta | / | 0.665 | |
| 3oew | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.665 | |
| 3wmx | NAD | NAD dependent epimerase/dehydratase | / | 0.665 | |
| 1n5d | NDP | Carbonyl reductase [NADPH] 1 | / | 0.664 | |
| 2c54 | NAD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.664 | |
| 4c7k | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.664 | |
| 4bii | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.663 | |
| 4gll | NAD | UDP-glucuronic acid decarboxylase 1 | 4.1.1.35 | 0.662 | |
| 4zju | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.662 | |
| 2h9i | EAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.661 | |
| 4rf2 | NAP | NADPH dependent R-specific alcohol dehydrogenase | / | 0.661 | |
| 1zem | NAD | Xylitol dehydrogenase | / | 0.660 | |
| 1w73 | NAP | 2,4-dienoyl-CoA reductase, mitochondrial | 1.3.1.34 | 0.659 | |
| 4bgi | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.659 | |
| 2wyv | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.658 | |
| 1gee | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.657 | |
| 2q2q | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.657 | |
| 3ruf | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.657 | |
| 1gco | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.656 | |
| 3geg | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.656 | |
| 3rj5 | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.656 | |
| 2aqh | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.655 | |
| 5js6 | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.654 | |
| 3a4v | NAD | NDP-sugar epimerase | / | 0.653 | |
| 1xkq | NDP | Uncharacterized protein | / | 0.652 | |
| 2hrb | NAP | Carbonyl reductase [NADPH] 3 | 1.1.1.184 | 0.652 | |
| 3oey | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.652 | |
| 3r3s | NAD | Putative oxidoreductase | / | 0.652 | |
| 3tox | NAP | Putative oxidoreductase | / | 0.652 | |
| 4imp | NDP | Polyketide synthase extender modules 3-4 | / | 0.652 | |
| 4hxy | NDP | Plm1 | / | 0.651 | |
| 5lc1 | NAD | L-threonine 3-dehydrogenase | / | 0.651 | |
| 3ru9 | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.650 | |
| 3uxy | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.650 |