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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hms FMN Phenazine biosynthesis protein PhzG 1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4hms FMNPhenazine biosynthesis protein PhzG 1.4 1.407
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 1.311
4hmw FMNPyridoxamine 5'-phosphate oxidase / 1.145
4hmx FMNPyridoxamine 5'-phosphate oxidase / 1.112
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.932
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.929
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.874
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.818
2hq9 FADMll6688 protein / 0.775
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.755
4fk8 FADFerredoxin--NADP reductase / 0.752
2vnj FADNADPH:ferredoxin reductase / 0.747
2qdx FADFerredoxin--NADP+ reductase / 0.746
2vnk FADNADPH:ferredoxin reductase / 0.746
2bgj FADNADPH:ferredoxin reductase / 0.742
4b4d FADFerredoxin-NADP reductase / 0.739
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.736
3r5y F42Uncharacterized protein / 0.736
2vnh FADNADPH:ferredoxin reductase / 0.735
3e4v FMNUncharacterized protein / 0.735
2ptf FMNUncharacterized protein MTH_863 / 0.734
2bf4 FADNADPH--cytochrome P450 reductase / 0.729
2eix FADNADH-cytochrome b5 reductase / 0.728
1pkv RBFRiboflavin synthase 2.5.1.9 0.727
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.716
2nr4 FMNConserved protein / 0.716
2pia FMNPhthalate dioxygenase reductase / 0.712
1j9z FADNADPH--cytochrome P450 reductase / 0.707
3a6q FMNFMN-binding protein / 0.707
1flm FMNFMN-binding protein / 0.706
3r5w F42Deazaflavin-dependent nitroreductase / 0.706
1usc FMNMonooxygenase / 0.705
3in6 FMNUncharacterized protein / 0.703
1cqx FADFlavohemoprotein / 0.702
3a6r FMNFMN-binding protein / 0.702
3vy2 FMNFMN-binding protein / 0.701
2iml FMNUncharacterized protein / 0.698
3crz FADFerredoxin--NADP+ reductase / 0.698
5j3w FMNSensory box protein / 0.698
1v5e FADPyruvate oxidase / 0.694
2z6c FMNPhototropin-1 2.7.11.1 0.694
4f07 FADStyrene monooxygenase component 2 / 0.693
3r5z F42Uncharacterized protein / 0.692
4eep FMNPhototropin-2 2.7.11.1 0.692
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.690
2bn4 FADNADPH--cytochrome P450 reductase / 0.690
2gpj FADSiderophore-interacting protein / 0.689
1gaq FADFerredoxin / 0.683
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.682
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.682
1wli FMNFMN-binding protein / 0.681
1wlk FMNFMN-binding protein / 0.681
1pox FADPyruvate oxidase 1.2.3.3 0.680
1eje FMNProtein MTH_152 / 0.679
1amo FADNADPH--cytochrome P450 reductase / 0.678
4hia FMNLOV protein / 0.678
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.677
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.677
5cho FADFlavin reductase / 0.677
3vy5 FMNFMN-binding protein / 0.675
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.673
3awh FMNFMN-binding protein / 0.672
3p7n FMNLight-activated DNA-binding protein EL222 / 0.672
3amf FMNFMN-binding protein / 0.670
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.670
4ybn FADFlavin-nucleotide-binding protein / 0.669
4rhe FMNFlavin prenyltransferase UbiX / 0.668
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.667
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.667
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.667
3a20 FMNFMN-binding protein / 0.667
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.666
3qe2 FADNADPH--cytochrome P450 reductase / 0.666
4eer FMNPhototropin-2 2.7.11.1 0.665
1tll FADNitric oxide synthase, brain 1.14.13.39 0.664
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.664
4dna FADProbable glutathione reductase / 0.664
1ja0 FADNADPH--cytochrome P450 reductase / 0.663
4hj3 FMNLOV protein / 0.663
3clu FADElectron transfer flavoprotein subunit alpha / 0.662
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.661
2bgi FADNADPH:ferredoxin reductase / 0.660
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.659
1gaw FADFerredoxin / 0.658
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.658
2rc5 FADFerredoxin--NADP reductase / 0.658
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.657
2pr5 FMNBlue-light photoreceptor / 0.657
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.657
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.657
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.656
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.655
2e83 FMNFMN-binding protein / 0.655
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.654
4eeu FMNPhototropin-2 2.7.11.1 0.654
5djt FMNNPH1-2 / 0.654
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.652
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.652
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.651
3clt FADElectron transfer flavoprotein subunit alpha / 0.651
3fpk FADFerredoxin-NADP reductase / 0.651
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.651
4y7c FADNADPH--cytochrome P450 reductase / 0.651
1pow FADPyruvate oxidase 1.2.3.3 0.650
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.650