sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4hh0 | FMN | AppA protein |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4hh0 | FMN | AppA protein | / | 1.000 | |
| 2iyg | FMN | AppA, antirepressor of ppsR, sensor of blue light | / | 0.898 | |
| 2iyi | FMN | AppA, antirepressor of ppsR, sensor of blue light | / | 0.876 | |
| 1yrx | FMN | AppA protein | / | 0.832 | |
| 3gg1 | FMN | Uncharacterized protein | / | 0.803 | |
| 1x0p | FAD | Tll0078 protein | / | 0.775 | |
| 3gfx | FMN | Uncharacterized protein | / | 0.766 | |
| 2hfn | FMN | Activator of photopigment and puc expression | / | 0.749 | |
| 3gg0 | FMN | Uncharacterized protein | / | 0.736 | |
| 2hfo | FMN | Activator of photopigment and puc expression | / | 0.735 | |
| 3gfz | FMN | Uncharacterized protein | / | 0.722 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.718 | |
| 3hji | FAD | Vivid PAS protein VVD | / | 0.715 | |
| 2pr5 | FMN | Blue-light photoreceptor | / | 0.713 | |
| 2z6c | FMN | Phototropin-1 | 2.7.11.1 | 0.713 | |
| 4irn | FAD | AnaB | / | 0.710 | |
| 3mzi | FMN | Activator of photopigment and puc expression | / | 0.702 | |
| 4yus | FMN | Family 3 adenylate cyclase | / | 0.700 | |
| 4kuk | RBF | Putative blue-light photoreceptor | / | 0.698 | |
| 1jeh | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.696 | |
| 1ng3 | FAD | Glycine oxidase | 1.4.3.19 | 0.696 | |
| 1owp | FAD | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.695 | |
| 1ryi | FAD | Glycine oxidase | 1.4.3.19 | 0.695 | |
| 5efw | FMN | NPH1-1 | / | 0.694 | |
| 1p4m | FMN | Riboflavin kinase | 2.7.1.26 | 0.692 | |
| 3d72 | FAD | Vivid PAS protein VVD | / | 0.692 | |
| 3eo8 | FMN | Putative nitroreductase | / | 0.692 | |
| 1efp | FAD | Electron transfer flavoprotein subunit alpha | / | 0.687 | |
| 2du8 | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.682 | |
| 2byc | FMN | Blue-light receptor of the BLUF-family | / | 0.681 | |
| 3ewk | FAD | Sensory box histidine kinase/response regulator | / | 0.681 | |
| 3t50 | FMN | Blue-light-activated histidine kinase | 2.7.13.3 | 0.681 | |
| 3znp | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.680 | |
| 4eep | FMN | Phototropin-2 | 2.7.11.1 | 0.680 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.680 | |
| 4hia | FMN | LOV protein | / | 0.678 | |
| 3clr | FAD | Electron transfer flavoprotein subunit alpha | / | 0.677 | |
| 5djt | FMN | NPH1-2 | / | 0.677 | |
| 2z6d | FMN | Phototropin-2 | 2.7.11.1 | 0.676 | |
| 3cuk | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.676 | |
| 4f07 | FAD | Styrene monooxygenase component 2 | / | 0.676 | |
| 3if9 | FAD | Glycine oxidase | 1.4.3.19 | 0.675 | |
| 2pg0 | FAD | Acyl-CoA dehydrogenase | / | 0.674 | |
| 1n07 | FMN | Riboflavin kinase | 2.7.1.26 | 0.671 | |
| 5hxw | FAD | L-amino acid deaminase | / | 0.671 | |
| 5ez7 | FAD | Probable FAD-dependent oxidoreductase PA4991 | / | 0.670 | |
| 3ad9 | FAD | Subunit beta of sarcosine oxidase | / | 0.669 | |
| 1owm | FAD | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.668 | |
| 3cls | FAD | Electron transfer flavoprotein subunit alpha | / | 0.667 | |
| 3lov | FAD | Protoporphyrinogen oxidase | / | 0.666 | |
| 5g3s | FDA | Flavin-dependent L-tryptophan oxidase VioA | / | 0.666 | |
| 1gth | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.665 | |
| 2rgh | FAD | Alpha-Glycerophosphate Oxidase | / | 0.665 | |
| 2yqu | FAD | Dihydrolipoyl dehydrogenase | / | 0.665 | |
| 5j3w | FMN | Sensory box protein | / | 0.664 | |
| 4hj6 | FMN | LOV protein | / | 0.662 | |
| 4z9r | FMN | Omega-3 polyunsaturated fatty acid synthase subunit PfaD | / | 0.662 | |
| 2e1m | FAD | L-glutamate oxidase | / | 0.660 | |
| 1jqi | FAD | Short-chain specific acyl-CoA dehydrogenase, mitochondrial | / | 0.659 | |
| 1yy5 | FAD | Polyamine oxidase FMS1 | / | 0.659 | |
| 4rnv | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.659 | |
| 5fs7 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.659 | |
| 1knp | FAD | L-aspartate oxidase | 1.4.3.16 | 0.656 | |
| 2jb2 | FAD | L-amino acid oxidase | / | 0.656 | |
| 1vcf | FMN | Isopentenyl-diphosphate delta-isomerase | / | 0.654 | |
| 2q0k | FAD | Thioredoxin reductase | 1.8.1.9 | 0.654 | |
| 2v1a | FMN | NPH1-1 | / | 0.653 | |
| 3sfe | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.653 | |
| 1gte | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.652 | |
| 2j3n | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.652 | |
| 2q3r | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.652 | |
| 3r5z | F42 | Uncharacterized protein | / | 0.652 | |
| 3in6 | FMN | Uncharacterized protein | / | 0.651 | |
| 3q9t | FAY | Uncharacterized protein | / | 0.651 | |
| 1buc | FAD | Acyl-CoA dehydrogenase, short-chain specific | 1.3.8.1 | 0.650 | |
| 3aeb | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.650 | |
| 3aty | FMN | Prostaglandin F2a synthase | / | 0.650 |