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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4edf UPG UDP-glucose 6-dehydrogenase 1.1.1.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4edf UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.423
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.224
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 1.195
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 1.002
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.980
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.971
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.966
2y0d UGAUDP-glucose dehydrogenase / 0.959
1dlj UGAUDP-glucose 6-dehydrogenase / 0.865
1dli UDXUDP-glucose 6-dehydrogenase / 0.792
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.781
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.743
1mfz GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.737
5a03 NDPGlucose-fructose oxidoreductase / 0.664
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.655