2.300 Å
X-ray
2009-10-30
Name: | UDP-glucose 6-dehydrogenase |
---|---|
ID: | UGDH_HUMAN |
AC: | O60701 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 1.1.1.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 95 % |
F | 5 % |
B-Factor: | 16.792 |
---|---|
Number of residues: | 46 |
Including | |
Standard Amino Acids: | 40 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 5 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.919 | 1410.750 |
% Hydrophobic | % Polar |
---|---|
37.32 | 62.68 |
According to VolSite |
HET Code: | UPG |
---|---|
Formula: | C15H22N2O17P2 |
Molecular weight: | 564.286 g/mol |
DrugBank ID: | DB01861 |
Buried Surface Area: | 71.25 % |
Polar Surface area: | 316.82 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 7 |
Rings: | 3 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
-61.6499 | -81.3831 | -16.4449 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CB | ALA- 164 | 4.06 | 0 | Hydrophobic |
O1B | N | GLU- 165 | 2.94 | 172.74 | H-Bond (Protein Donor) |
O6' | NZ | LYS- 220 | 2.83 | 143.29 | H-Bond (Protein Donor) |
O6' | ND2 | ASN- 224 | 3.02 | 166.83 | H-Bond (Protein Donor) |
C2' | CD1 | LEU- 227 | 4.27 | 0 | Hydrophobic |
C1C | CD1 | ILE- 231 | 3.91 | 0 | Hydrophobic |
O2' | NH2 | ARG- 260 | 3.48 | 120.5 | H-Bond (Protein Donor) |
O2' | NH1 | ARG- 260 | 2.71 | 140.85 | H-Bond (Protein Donor) |
O3' | NH2 | ARG- 260 | 2.81 | 163.97 | H-Bond (Protein Donor) |
N3 | O | LYS- 267 | 2.93 | 171.42 | H-Bond (Ligand Donor) |
O4 | N | LYS- 267 | 3.1 | 153.92 | H-Bond (Protein Donor) |
O2 | OG | SER- 269 | 2.89 | 173.66 | H-Bond (Protein Donor) |
C1C | CB | PHE- 272 | 3.9 | 0 | Hydrophobic |
C4C | CB | PHE- 272 | 3.85 | 0 | Hydrophobic |
O3C | N | GLY- 273 | 2.77 | 153.46 | H-Bond (Protein Donor) |
C5C | CE2 | PHE- 277 | 3.74 | 0 | Hydrophobic |
C1' | CE1 | PHE- 277 | 3.7 | 0 | Hydrophobic |
C3C | CD1 | PHE- 338 | 3.52 | 0 | Hydrophobic |
C5C | CE1 | PHE- 338 | 3.95 | 0 | Hydrophobic |
O3C | O | PHE- 338 | 2.85 | 168.25 | H-Bond (Ligand Donor) |
O1A | NZ | LYS- 339 | 3.14 | 0 | Ionic (Protein Cationic) |
O3A | NZ | LYS- 339 | 3.12 | 165.14 | H-Bond (Protein Donor) |
C2C | CB | LYS- 339 | 4.12 | 0 | Hydrophobic |
O2C | NH1 | ARG- 442 | 3.06 | 159.65 | H-Bond (Protein Donor) |
O3' | O | HOH- 486 | 2.9 | 179.97 | H-Bond (Protein Donor) |