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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3khu UPG UDP-glucose 6-dehydrogenase 1.1.1.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.253
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 1.191
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.047
4edf UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.966
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.958
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.918
1dli UDXUDP-glucose 6-dehydrogenase / 0.819
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.816
2y0d UGAUDP-glucose dehydrogenase / 0.811
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.776
1mfz GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.695
3lu1 UD2UDP-N-acetylglucosamine 4-epimerase / 0.690
1p6x THMThymidine kinase / 0.677
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.671
1p72 THMThymidine kinase / 0.665
4rv9 SAHD-mycarose 3-C-methyltransferase / 0.662
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 0.660
4py0 6ATP2Y purinoceptor 12 / 0.656
1n5i TMPThymidylate kinase 2.7.4.9 0.655
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.655
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.653