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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bn1 ADP Aurora kinase A 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bn1 ADPAurora kinase A 2.7.11.1 1.045
4ceg ADPAurora kinase A 2.7.11.1 0.823
4dee ADPAurora kinase A 2.7.11.1 0.823
5dt3 ATPAurora kinase A 2.7.11.1 0.817
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.809
2dwb ANPAurora kinase A 2.7.11.1 0.808
4utd ACPAurora kinase A 2.7.11.1 0.801
4aw1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.776
1mq4 ADPAurora kinase A 2.7.11.1 0.775
3t8o ATPRhodopsin kinase / 0.775
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.769
2pzp ACPFibroblast growth factor receptor 2 / 0.767
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.767
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.766
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.766
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.765
1ol5 ADPAurora kinase A 2.7.11.1 0.763
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.761
5drd ATPAurora kinase A 2.7.11.1 0.761
3c4z ADPRhodopsin kinase / 0.760
4qpm ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.753
5dnr ATPAurora kinase A 2.7.11.1 0.753
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.750
5dr2 ATPAurora kinase A 2.7.11.1 0.749
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.748
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.748
4krc AGSCyclin-dependent protein kinase PHO85 2.7.11.22 0.748
5dos ATPAurora kinase A 2.7.11.1 0.748
4qny ANPMitogen activated protein kinase, putative / 0.747
1ig1 ANPDeath-associated protein kinase 1 2.7.11.1 0.745
1j1b ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.742
3ori AGSSerine/threonine protein kinase / 0.741
1u5r ATPSerine/threonine-protein kinase TAO2 2.7.11.1 0.740
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.740
1m0w ANPGlutathione synthetase 6.3.2.3 0.739
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.738
3c50 ADPRhodopsin kinase / 0.738
2py3 ACPFibroblast growth factor receptor 2 / 0.733
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.733
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.730
3orm AGSSerine/threonine protein kinase / 0.730
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.730
1j7u ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.729
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.729
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.729
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.728
3nie ANPMitogen-activated protein kinase / 0.728
5dn3 ATPAurora kinase A 2.7.11.1 0.728
4nif ANPMitogen-activated protein kinase 1 2.7.11.24 0.725
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.724
4r8q ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.724
1ol7 ADPAurora kinase A 2.7.11.1 0.723
1pyx ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.723
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.722
4lfi GNPCasein kinase II subunit alpha 2.7.11.1 0.722
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.721
2y9q ANPMitogen-activated protein kinase 1 2.7.11.24 0.721
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.721
4nm7 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.721
2xuu ADPDeath-associated protein kinase 1 2.7.11.1 0.720
3tpt ADPSerine/threonine-protein kinase toxin HipA / 0.720
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.720
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.719
4eoo ATPCyclin-dependent kinase 2 2.7.11.22 0.719
4fmq ANPMitogen-activated protein kinase 1 2.7.11.24 0.719
4xlv ACPInsulin receptor 2.7.10.1 0.719
4ysj ADPCalmodulin-like domain protein kinase / 0.717
5awm ANPStress-activated protein kinase JNK 2.7.11.24 0.717
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.716
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.715
2xan ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.715
4f99 ADPCell division cycle 7-related protein kinase 2.7.11.1 0.715
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.714
1o6y ACPSerine/threonine-protein kinase PknB 2.7.11.1 0.713
4o4d ATPKinase / 0.712
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.711
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.711
2rio ADPSerine/threonine-protein kinase/endoribonuclease IRE1 2.7.11.1 0.709
2pul ACPMethylthioribose kinase 2.7.1.100 0.708
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.708
5dt4 ATPAurora kinase A 2.7.11.1 0.708
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.707
1mru AGSSerine/threonine-protein kinase PknB 2.7.11.1 0.707
2pz5 ACPFibroblast growth factor receptor 2 / 0.707
3gu4 ANPDeath-associated protein kinase 1 2.7.11.1 0.707
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.706
1jnk ANPMitogen-activated protein kinase 10 2.7.11.24 0.705
4o0u ADNAurora kinase A 2.7.11.1 0.704
3bu5 ATPInsulin receptor 2.7.10.1 0.703
4gvj ADPNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.703
4dn5 AGSMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.702
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.701
4bfm ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.701
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.700
1qmz ATPCyclin-dependent kinase 2 2.7.11.22 0.700
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.700
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.699
2pml ANPUncharacterized protein / 0.698
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.697
2pup ADPMethylthioribose kinase 2.7.1.100 0.697
3oro AGSSerine/threonine protein kinase / 0.697
2pui ADPMethylthioribose kinase 2.7.1.100 0.695
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.694
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.693
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.693
3qc9 ADPRhodopsin kinase / 0.692
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.692
3llt ANPProtein serine/threonine kinase-1 / 0.691
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.689
1u54 ACPActivated CDC42 kinase 1 / 0.689
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.688
4iir ANPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.688
4o4f ATPKinase / 0.688
5e92 ANPTGF-beta receptor type-2 2.7.11.30 0.687
4lv7 ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.686
1ol6 ATPAurora kinase A 2.7.11.1 0.685
3niz ADPCdc2-like CDK2/CDC28 like protein kinase / 0.685
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.685
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.685
1q8y ADPSerine/threonine-protein kinase SKY1 2.7.11.1 0.684
3c4x ATPRhodopsin kinase / 0.684
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.684
3igo ANPCalmodulin-domain protein kinase 1, putative / 0.684
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.684
4y12 AGSSerine/threonine-protein kinase PknG 2.7.11.1 0.684
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.682
4y0x ADPSerine/threonine-protein kinase PknG 2.7.11.1 0.682
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
2olc ADPMethylthioribose kinase 2.7.1.100 0.676
3nsz ANPCasein kinase II subunit alpha 2.7.11.1 0.676
4ork GDPBifunctional AAC/APH 2.3.1 0.676
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
3dfc ANPDeath-associated protein kinase 1 2.7.11.1 0.673
4o0w ADNAurora kinase A 2.7.11.1 0.672
4o4e ATPKinase / 0.672
2pun ACPMethylthioribose kinase 2.7.1.100 0.671
3att ATPPutative aminoglycoside phosphotransferase 2.7.1 0.671
3c4w ATPRhodopsin kinase / 0.671
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.669
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
4ux9 ANPMitogen-activated protein kinase 8 2.7.11.24 0.669
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.668
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.666
1q97 ATPSerine/threonine-protein kinase SKY1 2.7.11.1 0.666
2itv ANPEpidermal growth factor receptor 2.7.10.1 0.666
3r9x GNPGTPase Era / 0.666
1tu3 GNPRas-related protein Rab-5A / 0.665
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.665
1cm8 ANPMitogen-activated protein kinase 12 / 0.662
4azw ATPO-antigen chain terminator bifunctional methyltransferase/kinase WbdD / 0.662
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.662
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.661
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
4gyi ADPUncharacterized protein / 0.660
1day GNPCasein kinase II subunit alpha 2.7.11.1 0.658
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.658
4n57 ADPAPH(2'')-Id / 0.658
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.658
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
2acx ANPG protein-coupled receptor kinase 6 2.7.11.16 0.657
4rkf GNPRas-related protein Rab-3 / 0.657
1q24 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
3bc1 GNPRas-related protein Rab-27A / 0.656
5l8l ADPAurora kinase A 2.7.11.1 0.656
1csn ATPCasein kinase I homolog 1 2.7.11.1 0.655
3udz ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.655
4ib3 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4pds ANPSerine/threonine-protein kinase RAD53 2.7.12.1 0.655
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.654
3k5h ATPPhosphoribosyl-aminoimidazole carboxylase / 0.654
3wnz ADPAlanine--anticapsin ligase / 0.654
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.653
2x0q ATPAlcaligin biosynthesis protein / 0.653
2a19 ANPInterferon-induced, double-stranded RNA-activated protein kinase 2.7.11.1 0.652
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652
4axf ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.652
4ocp ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.652
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.652
1t91 GTPRas-related protein Rab-7a / 0.651
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.651
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.651
4kvg GTPRas-related protein Rap-1A / 0.651