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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r7i X9I Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r7i X9ICyclin-dependent kinase 2 2.7.11.22 0.913
3qx4 X4BCyclin-dependent kinase 2 2.7.11.22 0.819
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.793
3rm6 18ZCyclin-dependent kinase 2 2.7.11.22 0.791
3qzi X72Cyclin-dependent kinase 2 2.7.11.22 0.787
3r1s X73Cyclin-dependent kinase 2 2.7.11.22 0.781
3qqf X07Cyclin-dependent kinase 2 2.7.11.22 0.777
3r7e X88Cyclin-dependent kinase 2 2.7.11.22 0.777
3qwj X6ACyclin-dependent kinase 2 2.7.11.22 0.768
3r7v Z02Cyclin-dependent kinase 2 2.7.11.22 0.765
3r6x X84Cyclin-dependent kinase 2 2.7.11.22 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3qxo X65Cyclin-dependent kinase 2 2.7.11.22 0.744
3r73 X87Cyclin-dependent kinase 2 2.7.11.22 0.739
3r1y X76Cyclin-dependent kinase 2 2.7.11.22 0.736
3rpo 24ZCyclin-dependent kinase 2 2.7.11.22 0.734
3r7u X96Cyclin-dependent kinase 2 2.7.11.22 0.725
3rm7 19ZCyclin-dependent kinase 2 2.7.11.22 0.724
3qx2 X63Cyclin-dependent kinase 2 2.7.11.22 0.719
3rai X85Cyclin-dependent kinase 2 2.7.11.22 0.715
3r71 X86Cyclin-dependent kinase 2 2.7.11.22 0.714
3roy 22ZCyclin-dependent kinase 2 2.7.11.22 0.675