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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qvs NAD Myo-inositol-1-phosphate synthase (Ino1)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 1.169
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 1.140
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 1.074
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 1.073
3qw2 NADMyo-inositol-1-phosphate synthase (Ino1) / 0.902
1x7d NADPutative ornithine cyclodeaminase / 0.795
1u7h NADPutative ornithine cyclodeaminase / 0.787
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.750
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.746
1p1i NADInositol-3-phosphate synthase 5.5.1.4 0.738
3ko8 NADNAD-dependent epimerase/dehydratase / 0.725
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.717
1yba NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.717
1kol NADGlutathione-independent formaldehyde dehydrogenase / 0.714
4xq9 NADHomospermidine synthase 2.5.1.44 0.714
4xrg NADHomospermidine synthase 2.5.1.44 0.713
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.712
4xqc NADHomospermidine synthase 2.5.1.44 0.712
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.711
4i1i NADMalate dehydrogenase / 0.709
2p9c NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.708
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.706
2pa3 NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.706
4tvb NADHomospermidine synthase 2.5.1.44 0.705
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.701
4k28 NADShikimate dehydrogenase family protein / 0.699
1b3r NADAdenosylhomocysteinase 3.3.1.1 0.698
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.698
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.698
1pzg A3DLactate dehydrogenase / 0.697
2c20 NADUDP-glucose 4-epimerase / 0.696
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.696
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.696
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.696
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.695
1ie3 NADMalate dehydrogenase / 0.693
1orr NADCDP-paratose 2-epimerase / 0.693
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.692
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.690
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.690
1pjc NADAlanine dehydrogenase / 0.689
1b8v NADMalate dehydrogenase / 0.688
1u1i NADMyo-inositol-1-phosphate synthase (Ino1) / 0.687
4tm3 FADKtzI / 0.687
1ky4 NADAdenosylhomocysteinase 3.3.1.1 0.685
3aw9 NADNAD-dependent epimerase/dehydratase / 0.685
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.682
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.682
2a92 NAIL-lactate dehydrogenase / 0.681
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.681
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.680
4oaq NDPR-specific carbonyl reductase / 0.680
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.679
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.678
2ji7 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.678
2x0r NADMalate dehydrogenase / 0.678
1b8u NADMalate dehydrogenase / 0.676
1f8f NADBenzyl alcohol dehydrogenase / 0.676
2vyn NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.675
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.674
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.674
1pzh NADLactate dehydrogenase / 0.673
1t2c NAIL-lactate dehydrogenase 1.1.1.27 0.673
2ji9 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.673
4cr8 NADN-acylmannosamine 1-dehydrogenase 1.1.1.233 0.673
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.672
3d64 NADAdenosylhomocysteinase / 0.672
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.672
4xb2 NDP319aa long hypothetical homoserine dehydrogenase / 0.672
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.671
3a4v NADNDP-sugar epimerase / 0.671
3b1j NADGlyceraldehyde-3-phosphate dehydrogenase / 0.671
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.671
3orf NADDihydropteridine reductase 1.5.1.34 0.671
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.671
2aa3 AP0L-lactate dehydrogenase / 0.670
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.670
2a94 AP0L-lactate dehydrogenase 1.1.1.27 0.669
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.668
1i36 NAPConserved protein / 0.668
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.668
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.668
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.667
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.665
1pl8 NADSorbitol dehydrogenase 1.1.1.14 0.665
1sow NADL-lactate dehydrogenase 1.1.1.27 0.665
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.665
3cos NADAlcohol dehydrogenase 4 1.1.1.1 0.665
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.665
1dhr NADDihydropteridine reductase 1.5.1.34 0.663
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.663
1ib6 NADMalate dehydrogenase / 0.663
2ylx FADPhenylacetone monooxygenase 1.14.13.92 0.663
4d03 FADPhenylacetone monooxygenase 1.14.13.92 0.663
1pzf A3DLactate dehydrogenase / 0.662
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.662
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.662
4cpd NADAlcohol dehydrogenase / 0.662
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.662
3icp NADNAD-dependent epimerase/dehydratase / 0.661
4nd4 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.661
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.660
3q2k NAIProbable oxidoreductase / 0.660
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.659
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.659
4boy NADGlyceraldehyde-3-phosphate dehydrogenase / 0.659
4c4o NADSADH / 0.659
4yac NAIC alpha-dehydrogenase / 0.659
1zid ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.658
3tqh NDPQuinone oxidoreductase / 0.658
1bdm NAXMalate dehydrogenase / 0.657
3nt2 NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.657
1yqd NAPSinapyl alcohol dehydrogenase / 0.656
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.656
3ing NDPHomoserine dehydrogenase related protein / 0.656
6adh NADAlcohol dehydrogenase E chain 1.1.1.1 0.656
1dxy NADD-2-hydroxyisocaproate dehydrogenase 1.1.1 0.655
2fn7 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.655
3wmx NADNAD dependent epimerase/dehydratase / 0.655
4njo NADD-3-phosphoglycerate dehydrogenase, putative / 0.655
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.654
2y05 NAPProstaglandin reductase 1 / 0.654
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.654
2e37 NADL-lactate dehydrogenase / 0.653
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.653
2zwv SAHProbable ribosomal RNA small subunit methyltransferase / 0.653
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.653
4gdp FADPolyamine oxidase FMS1 / 0.653
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.653
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.653
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.652
3oet NADErythronate-4-phosphate dehydrogenase / 0.652
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.652
1pl6 NADSorbitol dehydrogenase 1.1.1.14 0.651
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.651
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.651
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.651
3m6i NADL-arabinitol 4-dehydrogenase 1.1.1.12 0.651
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.650