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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ptz UDX UDP-glucose 6-dehydrogenase 1.1.1.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 1.446
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.303
4edf UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.195
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.081
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 0.970
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.958
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.918
1dli UDXUDP-glucose 6-dehydrogenase / 0.893
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.869
1mfz GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.847
2y0d UGAUDP-glucose dehydrogenase / 0.811
1dlj UGAUDP-glucose 6-dehydrogenase / 0.774
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.741
5a03 NDPGlucose-fructose oxidoreductase / 0.659
5fsy AR6Uncharacterized protein / 0.659
5ch7 MGDDMSO reductase family type II enzyme, molybdopterin subunit / 0.658
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.655
5a02 NAPGlucose-fructose oxidoreductase / 0.655
1zh8 NAPUncharacterized protein / 0.652
4avl TMPPolymerase acidic protein / 0.650