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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pft FMN Flavin reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pft FMNFlavin reductase / 1.211
2pia FMNPhthalate dioxygenase reductase / 0.703
3eo8 FMNPutative nitroreductase / 0.698
4l82 FMNUncharacterized protein / 0.698
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.697
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.693
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.692
3e4v FMNUncharacterized protein / 0.692
3a3b RBFLumazine protein / 0.690
1a8p FADFerredoxin--NADP reductase / 0.688
2bgi FADNADPH:ferredoxin reductase / 0.688
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.685
1gaq FADFerredoxin / 0.683
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.683
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.683
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.682
3w5u FADFerredoxin / 0.681
3qvp FADGlucose oxidase 1.1.3.4 0.679
1c0k FADD-amino-acid oxidase 1.4.3.3 0.677
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.677
3if9 FADGlycine oxidase 1.4.3.19 0.677
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.676
2q0l FADThioredoxin reductase 1.8.1.9 0.674
2wp5 FADTrypanothione reductase / 0.674
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.673
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.672
4jic FMNGTN Reductase / 0.672
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.671
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.671
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.671
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.670
3mzi FMNActivator of photopigment and puc expression / 0.668
2bac FADPutative aminooxidase / 0.665
2wzv FMNNitroreductase NfnB / 0.665
3hjk FADVivid PAS protein VVD / 0.665
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.665
2b9y FADPutative aminooxidase / 0.664
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.663
2bn4 FADNADPH--cytochrome P450 reductase / 0.663
2hfo FMNActivator of photopigment and puc expression / 0.663
2qcu FADAerobic glycerol-3-phosphate dehydrogenase 1.1.5.3 0.663
3dme FADPutative conserved exported protein / 0.663
1ng4 FADGlycine oxidase 1.4.3.19 0.662
2igo FADPyranose 2-oxidase / 0.662
2jk6 FADTrypanothione reductase / 0.662
3fpk FADFerredoxin-NADP reductase / 0.662
1rz1 FADPhenol 2-hydroxylase component B / 0.661
2d29 FADAcyl-CoA dehydrogenase / 0.661
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.661
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.660
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.660
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.660
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.660
1eje FMNProtein MTH_152 / 0.659
1tyt FADTrypanothione reductase 1.8.1.12 0.659
3p8i FMNPentaerythritol tetranitrate reductase / 0.659
1fec FADTrypanothione reductase 1.8.1.12 0.658
2bf4 FADNADPH--cytochrome P450 reductase / 0.658
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.658
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.656
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.656
1gvh FADFlavohemoprotein / 0.655
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.655
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.655
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.654
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.654
2cfy FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.653
2vnj FADNADPH:ferredoxin reductase / 0.653
1knp FADL-aspartate oxidase 1.4.3.16 0.652
1p4m FMNRiboflavin kinase 2.7.1.26 0.652
3gsi FADDimethylglycine oxidase 1.5.3.10 0.652
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.652
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.651
2bab FADPutative aminooxidase / 0.651
3rha FDAPutrescine oxidase / 0.651
4k1x FADNADPH:ferredoxin reductase / 0.651
3aeb FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.650