Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pcn DHY Protocatechuate 3,4-dioxygenase alpha chain 1.13.11.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pcn DHYProtocatechuate 3,4-dioxygenase alpha chain 1.13.11.3 0.831
3pcn DHYProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.831
3pce 3HPProtocatechuate 3,4-dioxygenase alpha chain 1.13.11.3 0.684
3pce 3HPProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.684
1svw GTPProbable GTP-binding protein EngB / 0.661
3ftq GNPSeptin-2 / 0.661
4goj GNPADP-ribosylation factor-like protein 3 / 0.661
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.661
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.660
2bri ANPUridylate kinase 2.7.4.22 0.660
2xi3 GTPGenome polyprotein 2.7.7.48 0.660
2zue ANPArginine--tRNA ligase 6.1.1.19 0.660
3sop GDPNeuronal-specific septin-3 / 0.660
4g01 GDPRas-related protein RABF2b / 0.660
4ldj GDPGTPase KRas / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.660
4yqf GDPSeptin-9 / 0.660
4z17 PEPEnolase / 0.660
5cyo GDPSeptin-9 / 0.660
1ky2 GNPGTP-binding protein YPT7 / 0.658
2xtn GTPGTPase IMAP family member 2 / 0.657
5cyp GSPSeptin-9 / 0.655
1esn ANPPantothenate kinase 2.7.1.33 0.650
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.650
4oil HFTAndrogen receptor / 0.650