2.100 Å
X-ray
2015-02-16
Name: | Acyl-CoA synthetase (NDP forming) |
---|---|
ID: | B1L3C9_KORCO |
AC: | B1L3C9 |
Organism: | Korarchaeum cryptofilum |
Reign: | Archaea |
TaxID: | 374847 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 34 % |
C | 66 % |
B-Factor: | 33.248 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.383 | 2210.625 |
% Hydrophobic | % Polar |
---|---|
46.72 | 53.28 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.53 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
91.1679 | -21.268 | 73.2947 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | ND2 | ASN- 129 | 3.15 | 162.99 | H-Bond (Protein Donor) |
O2B | OG | SER- 160 | 2.75 | 158.27 | H-Bond (Protein Donor) |
O3A | N | GLY- 161 | 2.99 | 174.26 | H-Bond (Protein Donor) |
O1B | N | ALA- 162 | 2.91 | 156.4 | H-Bond (Protein Donor) |
DuAr | DuAr | HIS- 254 | 3.81 | 0 | Aromatic Face/Face |
O3B | N | GLY- 308 | 3.3 | 149.89 | H-Bond (Protein Donor) |
O2B | N | GLY- 309 | 3.27 | 165.1 | H-Bond (Protein Donor) |
O3B | MG | MG- 601 | 2.34 | 0 | Metal Acceptor |