2.100 Å
X-ray
2015-02-16
| Name: | Acyl-CoA synthetase (NDP forming) |
|---|---|
| ID: | B1L3C9_KORCO |
| AC: | B1L3C9 |
| Organism: | Korarchaeum cryptofilum |
| Reign: | Archaea |
| TaxID: | 374847 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 34 % |
| C | 66 % |
| B-Factor: | 33.248 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.383 | 2210.625 |
| % Hydrophobic | % Polar |
|---|---|
| 46.72 | 53.28 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 51.53 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 91.1679 | -21.268 | 73.2947 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | ND2 | ASN- 129 | 3.15 | 162.99 | H-Bond (Protein Donor) |
| O2B | OG | SER- 160 | 2.75 | 158.27 | H-Bond (Protein Donor) |
| O3A | N | GLY- 161 | 2.99 | 174.26 | H-Bond (Protein Donor) |
| O1B | N | ALA- 162 | 2.91 | 156.4 | H-Bond (Protein Donor) |
| DuAr | DuAr | HIS- 254 | 3.81 | 0 | Aromatic Face/Face |
| O3B | N | GLY- 308 | 3.3 | 149.89 | H-Bond (Protein Donor) |
| O2B | N | GLY- 309 | 3.27 | 165.1 | H-Bond (Protein Donor) |
| O3B | MG | MG- 601 | 2.34 | 0 | Metal Acceptor |