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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4z17

2.650 Å

X-ray

2015-03-26

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Enolase
ID:ENO_CHLAA
AC:A9WCM4
Organism:Chloroflexus aurantiacus
Reign:Bacteria
TaxID:324602
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:87.611
Number of residues:26
Including
Standard Amino Acids: 24
Non Standard Amino Acids: 2
Water Molecules: 0
Cofactors:
Metals: MG MG

Cavity properties

LigandabilityVolume (Å3)
0.330607.500

% Hydrophobic% Polar
40.5659.44
According to VolSite

Ligand :
4z17_2 Structure
HET Code: PEP
Formula: C3H2O6P
Molecular weight: 165.018 g/mol
DrugBank ID: DB01819
Buried Surface Area:67 %
Polar Surface area: 122.36 Å2
Number of
H-Bond Acceptors: 6
H-Bond Donors: 0
Rings: 0
Aromatic rings: 0
Anionic atoms: 3
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
167.0445.50892.5643


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O2'NZLYS- 3383.780Ionic
(Protein Cationic)
O2PNZLYS- 3382.810Ionic
(Protein Cationic)
O2PNZLYS- 3382.81135.02H-Bond
(Protein Donor)
O1PNSER- 3682.99140.41H-Bond
(Protein Donor)
O1NZLYS- 3893.28169.92H-Bond
(Protein Donor)
O2'NZLYS- 3893.44131.13H-Bond
(Protein Donor)
O1NZLYS- 3893.280Ionic
(Protein Cationic)
O2'NZLYS- 3893.440Ionic
(Protein Cationic)
O2'MG MG- 5012.590Metal Acceptor