2.060 Å
X-ray
1997-04-29
| Name: | Protocatechuate 3,4-dioxygenase alpha chain | Protocatechuate 3,4-dioxygenase beta chain |
|---|---|---|
| ID: | PCXA_PSEPU | PCXB_PSEPU |
| AC: | P00436 | P00437 |
| Organism: | Pseudomonas putida | |
| Reign: | Bacteria | |
| TaxID: | 303 | |
| EC Number: | 1.13.11.3 | |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 33 % |
| N | 67 % |
| B-Factor: | 18.378 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 20 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | FE |
| Ligandability | Volume (Å3) |
|---|---|
| 0.465 | 617.625 |
| % Hydrophobic | % Polar |
|---|---|
| 45.36 | 54.64 |
| According to VolSite | |

| HET Code: | 3HP |
|---|---|
| Formula: | C8H7O3 |
| Molecular weight: | 151.139 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 64.3 % |
| Polar Surface area: | 60.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 11.3873 | 41.5646 | 14.2453 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5 | CG2 | THR- 12 | 3.99 | 0 | Hydrophobic |
| C2 | CG | PRO- 15 | 4.15 | 0 | Hydrophobic |
| O3 | O | HOH- 247 | 3.13 | 149.27 | H-Bond (Protein Donor) |
| C7 | CE1 | TYR- 447 | 4.36 | 0 | Hydrophobic |
| C2 | OH | TYR- 447 | 2.79 | 172.43 | Weak HBond PROT |
| C7 | CD2 | TRP- 449 | 3.38 | 0 | Hydrophobic |
| C6 | CD | ARG- 457 | 4.11 | 0 | Hydrophobic |
| C1 | CG | ARG- 457 | 4.25 | 0 | Hydrophobic |
| C6 | CD1 | ILE- 491 | 3.23 | 0 | Hydrophobic |
| O3 | FE | FE- 600 | 1.92 | 0 | Metal Acceptor |