2.060 Å
X-ray
1997-04-29
Name: | Protocatechuate 3,4-dioxygenase alpha chain | Protocatechuate 3,4-dioxygenase beta chain |
---|---|---|
ID: | PCXA_PSEPU | PCXB_PSEPU |
AC: | P00436 | P00437 |
Organism: | Pseudomonas putida | |
Reign: | Bacteria | |
TaxID: | 303 | |
EC Number: | 1.13.11.3 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 33 % |
N | 67 % |
B-Factor: | 18.378 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | FE |
Ligandability | Volume (Å3) |
---|---|
0.465 | 617.625 |
% Hydrophobic | % Polar |
---|---|
45.36 | 54.64 |
According to VolSite |
HET Code: | 3HP |
---|---|
Formula: | C8H7O3 |
Molecular weight: | 151.139 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.3 % |
Polar Surface area: | 60.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
11.3873 | 41.5646 | 14.2453 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CG2 | THR- 12 | 3.99 | 0 | Hydrophobic |
C2 | CG | PRO- 15 | 4.15 | 0 | Hydrophobic |
O3 | O | HOH- 247 | 3.13 | 149.27 | H-Bond (Protein Donor) |
C7 | CE1 | TYR- 447 | 4.36 | 0 | Hydrophobic |
C2 | OH | TYR- 447 | 2.79 | 172.43 | Weak HBond PROT |
C7 | CD2 | TRP- 449 | 3.38 | 0 | Hydrophobic |
C6 | CD | ARG- 457 | 4.11 | 0 | Hydrophobic |
C1 | CG | ARG- 457 | 4.25 | 0 | Hydrophobic |
C6 | CD1 | ILE- 491 | 3.23 | 0 | Hydrophobic |
O3 | FE | FE- 600 | 1.92 | 0 | Metal Acceptor |