Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mt8 17T Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.945
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.925
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.844
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.840
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.839
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.836
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.833
2qn3 F55Glycogen phosphorylase, muscle form 2.4.1.1 0.826
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.811
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.809
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.804
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.790
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.790
2g9r G27Glycogen phosphorylase, muscle form 2.4.1.1 0.780
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.770
3t3i GPWGlycogen phosphorylase, muscle form 2.4.1.1 0.749
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.744
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.736
4xsr UPGAlr3699 protein / 0.708
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.696
3l7d DK5Glycogen phosphorylase, muscle form 2.4.1.1 0.696