2.070 Å
X-ray
2006-03-07
Name: | Glycogen phosphorylase, muscle form |
---|---|
ID: | PYGM_RABIT |
AC: | P00489 |
Organism: | Oryctolagus cuniculus |
Reign: | Eukaryota |
TaxID: | 9986 |
EC Number: | 2.4.1.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 28.290 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.624 | 388.125 |
% Hydrophobic | % Polar |
---|---|
41.74 | 58.26 |
According to VolSite |
HET Code: | G27 |
---|---|
Formula: | C15H24NO3 |
Molecular weight: | 266.356 g/mol |
DrugBank ID: | DB07807 |
Buried Surface Area: | 70.67 % |
Polar Surface area: | 65.13 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
34.6629 | 24.4402 | 27.3442 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C6 | CD2 | LEU- 139 | 4.15 | 0 | Hydrophobic |
C12 | CB | ASP- 283 | 4.46 | 0 | Hydrophobic |
C13 | CB | PHE- 285 | 4.42 | 0 | Hydrophobic |
O6 | ND1 | HIS- 377 | 2.73 | 147.2 | H-Bond (Ligand Donor) |
C9 | CB | THR- 378 | 4.49 | 0 | Hydrophobic |
C10 | CG2 | THR- 378 | 3.92 | 0 | Hydrophobic |
C15 | CD1 | LEU- 380 | 3.59 | 0 | Hydrophobic |
C14 | CG | GLU- 382 | 4.11 | 0 | Hydrophobic |
C16 | CB | ALA- 383 | 3.96 | 0 | Hydrophobic |
C11 | CB | ALA- 383 | 4.01 | 0 | Hydrophobic |
O4 | ND2 | ASN- 484 | 3.48 | 126.05 | H-Bond (Protein Donor) |
O6 | ND2 | ASN- 484 | 2.89 | 153.49 | H-Bond (Protein Donor) |
O3 | OE1 | GLU- 672 | 2.69 | 155.62 | H-Bond (Ligand Donor) |
O3 | N | SER- 674 | 2.89 | 171.89 | H-Bond (Protein Donor) |
C4 | CB | SER- 674 | 4.29 | 0 | Hydrophobic |
O3 | N | GLY- 675 | 2.93 | 139.58 | H-Bond (Protein Donor) |
O4 | N | GLY- 675 | 2.87 | 129.52 | H-Bond (Protein Donor) |