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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mpj FAD Glutaryl-CoA dehydrogenase 1.3.99.32

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 1.581
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 1.056
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.852
2dvl FADAcyl-CoA dehydrogenase / 0.848
3owa FADAcyl-CoA dehydrogenase / 0.829
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.824
2pg0 FADAcyl-CoA dehydrogenase / 0.819
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.816
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.814
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.806
2c12 FADNitroalkane oxidase 1.7.3.1 0.792
3mkh FADNitroalkane oxidase / 0.789
2d29 FADAcyl-CoA dehydrogenase / 0.784
5jsc FADPutative acyl-CoA dehydrogenase / 0.784
3oib FDAPutative acyl-CoA dehydrogenase / 0.783
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.781
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.771
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.771
3fcj FADNitroalkane oxidase 1.7.3.1 0.766
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.766
3r7k FDAProbable acyl CoA dehydrogenase / 0.761
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.751
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.749
2z1q FADAcyl-CoA dehydrogenase / 0.747
3p4t FAOPutative acyl-CoA dehydrogenase / 0.741
2zaf FADNitroalkane oxidase 1.7.3.1 0.740
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.738
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.734
4irn FADAnaB / 0.731
1r2j FADFkbI / 0.729
2fon FADAcyl-coenzyme A oxidase / 0.727
2eba FADPutative glutaryl-CoA dehydrogenase / 0.720
3pl8 FADPyranose 2-oxidase / 0.712
5ahs FADAcyl-CoA dehydrogenase / 0.707
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.701
5af7 FADAcyl-CoA dehydrogenase / 0.698
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.692
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.692
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.692
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.684
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.681
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.678
2wzv FMNNitroreductase NfnB / 0.676
2wzw FMNNitroreductase NfnB / 0.676
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.672
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.671
3gg1 FMNUncharacterized protein / 0.670
4utk FNRXenobiotic reductase / 0.668
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.667
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.667
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.665
3qe2 FADNADPH--cytochrome P450 reductase / 0.664
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.661
1tdo FADL-amino-acid oxidase 1.4.3.2 0.660
1vrq FMNSubunit alpha of sarocosine oxidase / 0.660
1vrq FMNSubunit beta of sarcosine oxidase / 0.660
1x31 FMNSubunit alpha of sarocosine oxidase / 0.659
1x31 FMNSubunit beta of sarcosine oxidase / 0.659
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.658
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.657
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.657
3koq FMNPutative nitroreductase / 0.656
4hj4 FMNLOV protein / 0.655
1k0j FADp-hydroxybenzoate hydroxylase / 0.654
2ohj FMNType A flavoprotein FprA 1 0.654
2reh FADNitroalkane oxidase 1.7.3.1 0.654
3cgb FADCoenzyme A disulfide reductase / 0.651
1h51 FMNPentaerythritol tetranitrate reductase / 0.650
3n39 FMNProtein NrdI / 0.650