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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mhp FAD Ferredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.304
1gaw FADFerredoxin / 1.268
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.256
3vo2 FADFerredoxin--NADP reductase / 1.238
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.236
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.235
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.233
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.230
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.218
1que FADFerredoxin--NADP reductase 1.18.1.2 1.217
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.215
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.215
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.210
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.210
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.207
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.204
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.201
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.198
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.193
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.192
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.187
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.184
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.181
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.179
3w5u FADFerredoxin / 1.178
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.172
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.172
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.159
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.158
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.151
1sm4 FADFerredoxin--NADP reductase / 1.149
1gaq FADFerredoxin / 1.139
2rc6 FADFerredoxin--NADP reductase / 1.135
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.124
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.122
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.121
2rc5 FADFerredoxin--NADP reductase / 1.115
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.057
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.051
3ojw FADNADPH--cytochrome P450 reductase / 1.044
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.036
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.024
1ja1 FADNADPH--cytochrome P450 reductase / 1.021
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.997
1tll FADNitric oxide synthase, brain 1.14.13.39 0.985
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.973
3qfs FADNADPH--cytochrome P450 reductase / 0.966
3qft FADNADPH--cytochrome P450 reductase / 0.955
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.953
4yaf FADNADPH--cytochrome P450 reductase / 0.943
1ja0 FADNADPH--cytochrome P450 reductase / 0.942
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.939
3qe2 FADNADPH--cytochrome P450 reductase / 0.929
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.928
3qfc FADNADPH--cytochrome P450 reductase / 0.923
1j9z FADNADPH--cytochrome P450 reductase / 0.916
3qfr FADNADPH--cytochrome P450 reductase / 0.916
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.913
4yau FADNADPH--cytochrome P450 reductase / 0.903
1cqx FADFlavohemoprotein / 0.901
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.894
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.869
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.864
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.862
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.850
3ojx FADNADPH--cytochrome P450 reductase / 0.846
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.839
4yao FADNADPH--cytochrome P450 reductase / 0.835
1amo FADNADPH--cytochrome P450 reductase / 0.832
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.823
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.815
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.805
4y9u FADNADPH--cytochrome P450 reductase / 0.803
4y7c FADNADPH--cytochrome P450 reductase / 0.802
3fpk FADFerredoxin-NADP reductase / 0.794
2bf4 FADNADPH--cytochrome P450 reductase / 0.790
1gvh FADFlavohemoprotein / 0.786
4y9r FADNADPH--cytochrome P450 reductase / 0.786
2eix FADNADH-cytochrome b5 reductase / 0.783
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.777
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.749
2gpj FADSiderophore-interacting protein / 0.745
2bn4 FADNADPH--cytochrome P450 reductase / 0.744
2pia FMNPhthalate dioxygenase reductase / 0.712
3in6 FMNUncharacterized protein / 0.710
4k1x FADNADPH:ferredoxin reductase / 0.710
2iml FMNUncharacterized protein / 0.708
2vnh FADNADPH:ferredoxin reductase / 0.708
2y48 FADLysine-specific histone demethylase 1A 1 0.697
3vqr FADPutative oxidoreductase / 0.695
3pl8 FADPyranose 2-oxidase / 0.694
4gde FDAUDP-galactopyranose mutase / 0.694
4u8m FDAUDP-galactopyranose mutase / 0.693
4u8n FDAUDP-galactopyranose mutase / 0.693
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.691
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.685
2vnk FADNADPH:ferredoxin reductase / 0.682
2igo FADPyranose 2-oxidase / 0.680
3if9 FADGlycine oxidase 1.4.3.19 0.679
4ybn FADFlavin-nucleotide-binding protein / 0.679
3utg FDAUDP-galactopyranose mutase / 0.678
2du8 FADD-amino-acid oxidase 1.4.3.3 0.677
2h94 FADLysine-specific histone demethylase 1A 1 0.677
2ign FADPyranose 2-oxidase / 0.677
2yg6 FADPutrescine oxidase / 0.676
1wli FMNFMN-binding protein / 0.675
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.674
3k4c FADPyranose 2-oxidase / 0.674
4fk8 FADFerredoxin--NADP reductase / 0.674
5j60 FADThioredoxin reductase / 0.672
3a20 FMNFMN-binding protein / 0.671
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.668
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.667
2bpo FADNADPH--cytochrome P450 reductase / 0.667
3a6q FMNFMN-binding protein / 0.666
3pft FMNFlavin reductase / 0.665
1v0j FADUDP-galactopyranose mutase 5.4.99.9 0.664
3cnt FADPolyamine oxidase FMS1 / 0.664
4wx1 FDAUDP-galactopyranose mutase / 0.664
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.662
5buk FADFADH2-dependent halogenase / 0.662
1wlk FMNFMN-binding protein / 0.661
2bgj FADNADPH:ferredoxin reductase / 0.661
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.661
3r5y F42Uncharacterized protein / 0.661
4i58 FADCyclohexylamine Oxidase / 0.660
4mok FADPyranose 2-oxidase / 0.659
1h83 FADPolyamine oxidase 1.5.3.14 0.658
2gv8 FADThiol-specific monooxygenase 1.14.13 0.658
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.658
3lsm SFDPyranose 2-oxidase / 0.657
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.656
2yg3 FADPutrescine oxidase / 0.656
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.655
3e4v FMNUncharacterized protein / 0.655
2jkc FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.654
3rh7 FMNUncharacterized protein / 0.654
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.653
4hsu FADLysine-specific histone demethylase 1B 1 0.652
1a8p FADFerredoxin--NADP reductase / 0.651
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.651
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
2nr4 FMNConserved protein / 0.651
3vy2 FMNFMN-binding protein / 0.651
1eje FMNProtein MTH_152 / 0.650
3a3b RBFLumazine protein / 0.650
3cn8 FADPolyamine oxidase FMS1 / 0.650
3uka FADUDP-galactopyranose mutase / 0.650
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.650
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.650