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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gg2 UGA Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 1.390
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 1.031
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 1.001
4edf UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.980
2y0d UGAUDP-glucose dehydrogenase / 0.971
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.918
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.918
1dlj UGAUDP-glucose 6-dehydrogenase / 0.895
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.860
1dli UDXUDP-glucose 6-dehydrogenase / 0.784
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.783
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.745
1mfz GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.729
4xr9 TMPCalS8 / 0.670
1g9r UPFLgtC / 0.662
1g0r THMGlucose-1-phosphate thymidylyltransferase / 0.656