1.870 Å
X-ray
2000-10-07
| Name: | Glucose-1-phosphate thymidylyltransferase |
|---|---|
| ID: | Q9HU22_PSEAE |
| AC: | Q9HU22 |
| Organism: | Pseudomonas aeruginosa |
| Reign: | Bacteria |
| TaxID: | 208964 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| G | 100 % |
| B-Factor: | 15.512 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.740 | 421.875 |
| % Hydrophobic | % Polar |
|---|---|
| 50.40 | 49.60 |
| According to VolSite | |

| HET Code: | THM |
|---|---|
| Formula: | C10H14N2O5 |
| Molecular weight: | 242.229 g/mol |
| DrugBank ID: | DB04485 |
| Buried Surface Area: | 69.04 % |
| Polar Surface area: | 99.1 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 79.2873 | 24.0887 | -7.19124 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C2' | CD1 | LEU- 45 | 3.56 | 0 | Hydrophobic |
| C1' | CE1 | TYR- 114 | 3.71 | 0 | Hydrophobic |
| C4' | CE1 | TYR- 114 | 3.46 | 0 | Hydrophobic |
| O3' | N | GLY- 115 | 2.93 | 166.77 | H-Bond (Protein Donor) |
| C3' | CB | PHE- 118 | 4.02 | 0 | Hydrophobic |
| C5M | CD | ARG- 219 | 4.22 | 0 | Hydrophobic |
| C5' | CG | ARG- 219 | 3.74 | 0 | Hydrophobic |
| O2 | N | ALA- 251 | 2.88 | 167.49 | H-Bond (Protein Donor) |
| C5M | CD | ARG- 259 | 3.99 | 0 | Hydrophobic |
| N3 | O | HOH- 2548 | 2.95 | 157.29 | H-Bond (Ligand Donor) |