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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g2l LEW Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 1.050
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.898
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.890
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.849
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.836
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.832
2qn3 F55Glycogen phosphorylase, muscle form 2.4.1.1 0.829
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.828
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.826
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.810
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.803
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.792
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.775
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.775
2qln F59Glycogen phosphorylase, muscle form 2.4.1.1 0.772
3t3i GPWGlycogen phosphorylase, muscle form 2.4.1.1 0.772
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.770
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.758
2g9r G27Glycogen phosphorylase, muscle form 2.4.1.1 0.750
3l7d DK5Glycogen phosphorylase, muscle form 2.4.1.1 0.737
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.698
1uqu UPGTrehalose-6-phosphate synthase 2.4.1.15 0.668