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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3crz FAD Ferredoxin--NADP+ reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3crz FADFerredoxin--NADP+ reductase / 1.639
2qdx FADFerredoxin--NADP+ reductase / 1.440
4b4d FADFerredoxin-NADP reductase / 1.276
2vnk FADNADPH:ferredoxin reductase / 1.213
2bgj FADNADPH:ferredoxin reductase / 1.208
4fk8 FADFerredoxin--NADP reductase / 1.161
2vnh FADNADPH:ferredoxin reductase / 1.121
2vnj FADNADPH:ferredoxin reductase / 1.111
2bgi FADNADPH:ferredoxin reductase / 1.069
4k1x FADNADPH:ferredoxin reductase / 1.016
1cqx FADFlavohemoprotein / 0.891
1a8p FADFerredoxin--NADP reductase / 0.885
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.864
1amo FADNADPH--cytochrome P450 reductase / 0.840
3qfc FADNADPH--cytochrome P450 reductase / 0.830
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.826
1ja1 FADNADPH--cytochrome P450 reductase / 0.819
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.816
1j9z FADNADPH--cytochrome P450 reductase / 0.812
3qfs FADNADPH--cytochrome P450 reductase / 0.796
3qe2 FADNADPH--cytochrome P450 reductase / 0.795
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.794
4yaf FADNADPH--cytochrome P450 reductase / 0.794
4y9u FADNADPH--cytochrome P450 reductase / 0.784
4yau FADNADPH--cytochrome P450 reductase / 0.783
3ojw FADNADPH--cytochrome P450 reductase / 0.782
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.782
4y7c FADNADPH--cytochrome P450 reductase / 0.780
2bn4 FADNADPH--cytochrome P450 reductase / 0.779
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.777
3ojx FADNADPH--cytochrome P450 reductase / 0.764
4y9r FADNADPH--cytochrome P450 reductase / 0.764
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.758
3qft FADNADPH--cytochrome P450 reductase / 0.750
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.750
3qfr FADNADPH--cytochrome P450 reductase / 0.749
4yao FADNADPH--cytochrome P450 reductase / 0.747
2ptf FMNUncharacterized protein MTH_863 / 0.741
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.737
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.735
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.730
1gvh FADFlavohemoprotein / 0.729
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.724
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.720
2bpo FADNADPH--cytochrome P450 reductase / 0.719
2gpj FADSiderophore-interacting protein / 0.717
1rz1 FADPhenol 2-hydroxylase component B / 0.715
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.715
1tll FADNitric oxide synthase, brain 1.14.13.39 0.712
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.712
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.711
2rc5 FADFerredoxin--NADP reductase / 0.710
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.708
3bnk FMNFlavoredoxin / 0.708
2bf4 FADNADPH--cytochrome P450 reductase / 0.705
1usc FMNMonooxygenase / 0.701
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.698
4eet FMNPhototropin-2 2.7.11.1 0.695
4f07 FADStyrene monooxygenase component 2 / 0.695
2nr4 FMNConserved protein / 0.693
2pr5 FMNBlue-light photoreceptor / 0.693
1eje FMNProtein MTH_152 / 0.690
4eer FMNPhototropin-2 2.7.11.1 0.689
1ja0 FADNADPH--cytochrome P450 reductase / 0.687
2eix FADNADH-cytochrome b5 reductase / 0.687
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.686
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.685
1rz0 FADPhenol 2-hydroxylase component B / 0.684
3fpk FADFerredoxin-NADP reductase / 0.683
3amf FMNFMN-binding protein / 0.679
3a20 FMNFMN-binding protein / 0.678
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.678
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.676
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.676
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.675
5cho FADFlavin reductase / 0.674
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.672
3e4v FMNUncharacterized protein / 0.667
2dji FADPyruvate oxidase / 0.665
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.664
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.664
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.663
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
3g51 ANPRibosomal protein S6 kinase alpha-3 2.7.11.1 0.662
4hhd FMNPhototropin-1 2.7.11.1 0.662
2nli FMNLactate oxidase / 0.661
3vy5 FMNFMN-binding protein / 0.660
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
3vy2 FMNFMN-binding protein / 0.659
2rc6 FADFerredoxin--NADP reductase / 0.657
5j3w FMNSensory box protein / 0.657
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.655
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.655
1wlk FMNFMN-binding protein / 0.654
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.653
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.653
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.652
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.650
2e83 FMNFMN-binding protein / 0.650
3p7n FMNLight-activated DNA-binding protein EL222 / 0.650