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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c4h DRL Poly [ADP-ribose] polymerase 3 2.4.2.30

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c4h DRLPoly [ADP-ribose] polymerase 3 2.4.2.30 0.858
4gv4 MEJPoly [ADP-ribose] polymerase 3 2.4.2.30 0.768
4gv2 5MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.760
4r5w XAVPoly [ADP-ribose] polymerase 1 2.4.2.30 0.746
4gv0 8MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.736
4pnr G18Tankyrase-2 2.4.2.30 0.730
5ds3 09LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.725
3kr8 XAVTankyrase-2 2.4.2.30 0.711
4tjy 3GNTankyrase-2 2.4.2.30 0.711
2rd6 78PPoly [ADP-ribose] polymerase 1 2.4.2.30 0.706
4buv 16ITankyrase-2 2.4.2.30 0.705
4buf F36Tankyrase-2 2.4.2.30 0.703
1efy BZCPoly [ADP-ribose] polymerase 1 2.4.2.30 0.702
4bue JQFTankyrase-2 2.4.2.30 0.702
4gv7 MEWPoly [ADP-ribose] polymerase 1 2.4.2.30 0.701
1pax DHQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.695
4buw F33Tankyrase-2 2.4.2.30 0.695
2rcw AAIPoly [ADP-ribose] polymerase 1 2.4.2.30 0.694
4bui W2ETankyrase-2 2.4.2.30 0.693
4buu F38Tankyrase-2 2.4.2.30 0.692
4hhz 15SPoly [ADP-ribose] polymerase 1 2.4.2.30 0.691
3gn7 3GNPoly [ADP-ribose] polymerase 1 2.4.2.30 0.689
4l0t 1V0Tankyrase-2 2.4.2.30 0.684
5aku 29FTankyrase-2 2.4.2.30 0.684
4mt9 2D6Tankyrase-1 2.4.2.30 0.683
4l2f 1V3Tankyrase-2 2.4.2.30 0.681
4kzu A73Tankyrase-2 2.4.2.30 0.678
4msg 2C6Tankyrase-1 2.4.2.30 0.678
4bj9 UHBTankyrase-2 2.4.2.30 0.673
4bjb P34Tankyrase-2 2.4.2.30 0.673
4l34 1VGTankyrase-2 2.4.2.30 0.670
3l3m A92Poly [ADP-ribose] polymerase 1 2.4.2.30 0.669
4pnm NU1Tankyrase-2 2.4.2.30 0.668
4l0s 1UZTankyrase-2 2.4.2.30 0.667
4avw G18Tankyrase-2 2.4.2.30 0.664
4bs4 A64Tankyrase-2 2.4.2.30 0.663
4li6 1XOTankyrase-1 2.4.2.30 0.663
4hlh 20DTankyrase-2 2.4.2.30 0.662
4l31 F08Tankyrase-2 2.4.2.30 0.662
5ewk P34Putative secreted protein / 0.662
4li8 1XQTankyrase-1 2.4.2.30 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4bux F35Tankyrase-2 2.4.2.30 0.660
4l09 1URTankyrase-2 2.4.2.30 0.653
4l10 A63Tankyrase-2 2.4.2.30 0.653
4f1l 0RYPoly [ADP-ribose] polymerase 14 2.4.2.30 0.652
4hl5 15WTankyrase-2 2.4.2.30 0.652
4l0v 1V1Tankyrase-2 2.4.2.30 0.652
4e5f 0N7Polymerase acidic protein / 0.651