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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bts NAD Galactose/lactose metabolism regulatory protein GAL80

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bts NADGalactose/lactose metabolism regulatory protein GAL80 / 1.088
1hsz NADAlcohol dehydrogenase 1B 1.1.1.1 0.689
3q2k NAIProbable oxidoreductase / 0.680
2o4c NADErythronate-4-phosphate dehydrogenase / 0.674
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
3jv7 NADSecondary alcohol dehydrogenase / 0.672
1zh8 NAPUncharacterized protein / 0.670
2vna NAPProstaglandin reductase 2 1.3.1.48 0.669
5a04 NDPGlucose-fructose oxidoreductase / 0.669
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.668
5a03 NDPGlucose-fructose oxidoreductase / 0.668
5a05 NDPGlucose-fructose oxidoreductase / 0.668
4oaq NDPR-specific carbonyl reductase / 0.666
3m2t NADProbable dehydrogenase / 0.664
4b7x NAPProbable oxidoreductase / 0.661
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.659
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.656
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.656
1adc PADAlcohol dehydrogenase E chain 1.1.1.1 0.655
1e5q NDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming] 1.5.1.10 0.655
5lc1 NADL-threonine 3-dehydrogenase / 0.655
3tnl NADShikimate dehydrogenase (NADP(+)) / 0.654
5a06 NDPGlucose-fructose oxidoreductase / 0.654
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.650
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 0.650
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 0.650
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.650