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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3am3 TCL Enoyl-ACP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3am3 TCLEnoyl-ACP reductase / 1.056
3am5 TCLEnoyl-ACP reductase / 0.950
1uh5 TCLEnoyl-ACP reductase / 0.932
3lt2 FT3Enoyl-ACP reductase / 0.925
2o2y TCLEnoyl-ACP reductase / 0.913
2ol4 JPNEnoyl-ACP reductase / 0.860
2o2s TCLEnoyl-acyl carrier reductase / 0.853
3f4b TCLEnoyl-acyl carrier protein reductase / 0.844
1zxl JP1Enoyl-ACP reductase / 0.813
4ige CHJEnoyl-acyl carrier reductase / 0.798
1zw1 TN5Enoyl-ACP reductase / 0.788
1zsn TN2Enoyl-ACP reductase / 0.767
3lt1 FT2Enoyl-ACP reductase / 0.754
2op1 8PCEnoyl-ACP reductase / 0.752
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1nhw TCCEnoyl-ACP reductase / 0.740
2op0 7PCEnoyl-ACP reductase / 0.738
1d7o TCLEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.706
3fnf JPMEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
3nrc TCLEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.681
2foi JPAEnoyl-acyl carrier reductase / 0.680
3lsy FT0Enoyl-ACP reductase / 0.679
3nj8 NJ8Enoyl-acyl carrier reductase / 0.667
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1nhg TCLEnoyl-ACP reductase / 0.658
4igf CHVEnoyl-acyl carrier reductase / 0.656