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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

3lsy

2.850 Å

X-ray

2010-02-14

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Enoyl-ACP reductase
ID:Q9BJJ9_PLAFA
AC:Q9BJJ9
Organism:Plasmodium falciparum
Reign:Eukaryota
TaxID:5833
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:46.809
Number of residues:27
Including
Standard Amino Acids: 26
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors: NAD
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.362455.625

% Hydrophobic% Polar
61.4838.52
According to VolSite

Ligand :
3lsy_2 Structure
HET Code: FT0
Formula: C13H10O3
Molecular weight: 214.217 g/mol
DrugBank ID: -
Buried Surface Area:74.16 %
Polar Surface area: 46.53 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 1
Rings: 2
Aromatic rings: 2
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
11.466699.324625.6279


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C9CBALA- 2173.560Hydrophobic
C12CG2VAL- 2224.050Hydrophobic
C3CBTYR- 2674.370Hydrophobic
O16OHTYR- 2772.82163.59H-Bond
(Protein Donor)
C3CE1TYR- 2773.340Hydrophobic
C11SDMET- 2814.180Hydrophobic
C12CGMET- 2813.670Hydrophobic
C13CEMET- 2813.970Hydrophobic
C9CBALA- 3193.650Hydrophobic
C5CBALA- 3203.710Hydrophobic
C5CD1ILE- 3234.360Hydrophobic
C13CD1ILE- 3234.490Hydrophobic
C2C2DNAD- 6013.640Hydrophobic