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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xx4 13I ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xx4 13IATP-dependent molecular chaperone HSP82 / 1.000
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.895
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.870
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.860
1u0z RDCEndoplasmin / 0.798
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.792
4egk RDCHeat shock protein HSP 90-alpha / 0.790
2gfd RDAEndoplasmin / 0.784
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.784
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.779
1qy8 RDIEndoplasmin / 0.774
4b7p 9UNHeat shock protein HSP 90-alpha / 0.765
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.758
2yi5 YI5Heat shock protein HSP 90-alpha / 0.752
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3ekr PY9Heat shock protein HSP 90-alpha / 0.741
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.730
3k97 4CDHeat shock protein HSP 90-alpha / 0.716
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.704
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.695
3inw JZBHeat shock protein HSP 90-alpha / 0.687
2q8i RDC[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial 2.7.11.2 0.683
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.681
4e5l DBHPolymerase acidic protein / 0.677
3hek BD0Heat shock protein HSP 90-alpha / 0.669
4bqj XKLHeat shock protein HSP 90-alpha / 0.662
2ye9 2D4Heat shock protein HSP 90-alpha / 0.658
2uwd 2GGHeat shock protein HSP 90-alpha / 0.653
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.653
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.650