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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vnj FAD NADPH:ferredoxin reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vnj FADNADPH:ferredoxin reductase / 1.443
2bgj FADNADPH:ferredoxin reductase / 1.269
2vnk FADNADPH:ferredoxin reductase / 1.264
2bgi FADNADPH:ferredoxin reductase / 1.238
2qdx FADFerredoxin--NADP+ reductase / 1.184
4b4d FADFerredoxin-NADP reductase / 1.141
3crz FADFerredoxin--NADP+ reductase / 1.111
2vnh FADNADPH:ferredoxin reductase / 1.099
4k1x FADNADPH:ferredoxin reductase / 0.994
4fk8 FADFerredoxin--NADP reductase / 0.987
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.910
1a8p FADFerredoxin--NADP reductase / 0.887
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.866
1amo FADNADPH--cytochrome P450 reductase / 0.849
1cqx FADFlavohemoprotein / 0.847
2eix FADNADH-cytochrome b5 reductase / 0.843
2bf4 FADNADPH--cytochrome P450 reductase / 0.830
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.816
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.814
1j9z FADNADPH--cytochrome P450 reductase / 0.791
3qe2 FADNADPH--cytochrome P450 reductase / 0.778
3qfs FADNADPH--cytochrome P450 reductase / 0.769
4y7c FADNADPH--cytochrome P450 reductase / 0.763
3ojw FADNADPH--cytochrome P450 reductase / 0.758
4y9r FADNADPH--cytochrome P450 reductase / 0.756
3qft FADNADPH--cytochrome P450 reductase / 0.755
4y9u FADNADPH--cytochrome P450 reductase / 0.755
3qfc FADNADPH--cytochrome P450 reductase / 0.754
3qfr FADNADPH--cytochrome P450 reductase / 0.753
2bn4 FADNADPH--cytochrome P450 reductase / 0.750
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.747
2gpj FADSiderophore-interacting protein / 0.746
2iml FMNUncharacterized protein / 0.744
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.743
1ja1 FADNADPH--cytochrome P450 reductase / 0.738
3in6 FMNUncharacterized protein / 0.736
2ptf FMNUncharacterized protein MTH_863 / 0.735
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.734
1gvh FADFlavohemoprotein / 0.730
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.728
3ojx FADNADPH--cytochrome P450 reductase / 0.726
3e4v FMNUncharacterized protein / 0.720
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.715
4yau FADNADPH--cytochrome P450 reductase / 0.711
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.710
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.708
2bpo FADNADPH--cytochrome P450 reductase / 0.707
4yaf FADNADPH--cytochrome P450 reductase / 0.707
4eer FMNPhototropin-2 2.7.11.1 0.706
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.705
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.703
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.700
5cho FADFlavin reductase / 0.700
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.699
3fpk FADFerredoxin-NADP reductase / 0.699
1eje FMNProtein MTH_152 / 0.698
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.697
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.696
3a6r FMNFMN-binding protein / 0.696
3a6q FMNFMN-binding protein / 0.695
1flm FMNFMN-binding protein / 0.694
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.694
4eep FMNPhototropin-2 2.7.11.1 0.694
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.692
1tll FADNitric oxide synthase, brain 1.14.13.39 0.691
2nr4 FMNConserved protein / 0.687
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.684
2rc5 FADFerredoxin--NADP reductase / 0.684
1usc FMNMonooxygenase / 0.683
3bnk FMNFlavoredoxin / 0.683
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.682
4yao FADNADPH--cytochrome P450 reductase / 0.682
1v5e FADPyruvate oxidase / 0.681
3vy2 FMNFMN-binding protein / 0.681
3a20 FMNFMN-binding protein / 0.680
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.680
2e83 FMNFMN-binding protein / 0.679
3amf FMNFMN-binding protein / 0.679
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.677
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.677
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.676
2pr5 FMNBlue-light photoreceptor / 0.674
2zfa FMNLactate oxidase / 0.673
1efp FADElectron transfer flavoprotein subunit alpha / 0.672
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.671
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.671
3vy5 FMNFMN-binding protein / 0.671
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.668
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.666
4f07 FADStyrene monooxygenase component 2 / 0.666
1ja0 FADNADPH--cytochrome P450 reductase / 0.661
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.658
2nli FMNLactate oxidase / 0.657
4utl FNRXenobiotic reductase / 0.655
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.654
3pft FMNFlavin reductase / 0.653
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.651
3awh FMNFMN-binding protein / 0.651
2z6c FMNPhototropin-1 2.7.11.1 0.650