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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qd4 CHD Ferrochelatase, mitochondrial 4.99.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 1.083
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.859
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 0.820
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.733
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.731
3w5p 4OAVitamin D3 receptor / 0.725
3w5r LOAVitamin D3 receptor / 0.704
3w5t LHPVitamin D3 receptor / 0.700
3w5q 3KLVitamin D3 receptor / 0.693
2jn3 JN3Fatty acid-binding protein, liver / 0.691
3gyt DL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.673
4q0a 4OAVitamin D3 receptor A / 0.673
3mne DEXGlucocorticoid receptor / 0.672
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.668
1sr7 MOFProgesterone receptor / 0.665
1qyw 5SDEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.664
2aax PDNMineralocorticoid receptor / 0.663
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2abi 1CAMineralocorticoid receptor / 0.659
1tw4 CHDFatty acid-binding protein, liver / 0.658
2oax SNLMineralocorticoid receptor / 0.657
4j6d TESCytochrome P450 monooxygenase / 0.655
1y9r 1CAMineralocorticoid receptor / 0.654