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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qbn CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.878
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.836
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.825
2qbm CAMCamphor 5-monooxygenase 1.14.15.1 0.819
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.811
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.811
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.809
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.799
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.798
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.796
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.789
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.789
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.788
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.786
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.782
1geb CAMCamphor 5-monooxygenase 1.14.15.1 0.781
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.777
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.777
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.776
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.773
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.771
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.769
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.768
2zaw CAMCamphor 5-monooxygenase 1.14.15.1 0.768
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.768
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.767
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.766
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.762
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.758
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.756
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.756
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.753
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.753
2cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.747
3fwf CAMCamphor 5-monooxygenase 1.14.15.1 0.746
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.746
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
2feu CAMCamphor 5-monooxygenase 1.14.15.1 0.740
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.736
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.735
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.727
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.724
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.719
3lxi CAMCytochrome P450 / 0.684
4c9o CAMCytochrome P450 / 0.683
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.682
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.653
4jx1 CAMCamphor 5-monooxygenase 1.14.15.1 0.650