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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q9u FMN A-type flavoprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q9u FMNA-type flavoprotein / 1.164
2ohh FMNType A flavoprotein FprA 1 0.914
1ych FMNNitric oxide reductase 1 0.900
1ycg FMNNitric oxide reductase 1 0.870
2ohj FMNType A flavoprotein FprA 1 0.864
1ycf FMNNitric oxide reductase 1 0.854
2ohi FMNType A flavoprotein FprA 1 0.848
4j8p FMNFlavodoxin / 0.776
3klb FMNUncharacterized protein / 0.759
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.758
1yob FMNFlavodoxin 2 / 0.757
4r81 FMNPredicted NADH dehydrogenase / 0.754
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.751
2b3d FADModulator of drug activity B / 0.750
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.746
3rpe FADPutative modulator of drug activity / 0.746
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.744
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.740
2fcr FMNFlavodoxin / 0.732
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.732
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.732
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.731
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.730
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.729
1t5b FMNFMN-dependent NADH-azoreductase / 0.727
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.724
4bmo FMNProtein NrdI / 0.724
2fx2 FMNFlavodoxin / 0.719
1ofv FMNFlavodoxin / 0.718
3qe2 FMNNADPH--cytochrome P450 reductase / 0.717
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.715
3n39 FMNProtein NrdI / 0.714
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.713
1wsb FMNFlavodoxin / 0.710
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
1xyv FMNFlavodoxin / 0.706
3n3b FMNProtein NrdI / 0.703
3qfr FMNNADPH--cytochrome P450 reductase / 0.701
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.698
3ojx FMNNADPH--cytochrome P450 reductase / 0.694
1j8q FMNFlavodoxin / 0.693
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.693
3esy FMNFlavodoxin / 0.691
3n3a FMNProtein NrdI / 0.689
3ojw FMNNADPH--cytochrome P450 reductase / 0.689
1czn FMNFlavodoxin / 0.688
4y7c FMNNADPH--cytochrome P450 reductase / 0.688
4oxx FMNCindoxin / 0.686
1amo FMNNADPH--cytochrome P450 reductase / 0.680
2v5v FMNFlavodoxin / 0.678
3kaq FMNFlavodoxin / 0.678
4hs4 FMNChromate reductase / 0.678
3mkh FADNitroalkane oxidase / 0.677
1ja0 FMNNADPH--cytochrome P450 reductase / 0.675
1akw FMNFlavodoxin / 0.674
1gwj FMNMorphinone reductase / 0.674
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.674
3f90 FMNFlavodoxin / 0.674
1ahn FMNFlavodoxin 1 / 0.673
1akr FMNFlavodoxin / 0.672
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.671
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.671
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.671
1azl FMNFlavodoxin / 0.670
3esz FMNFlavodoxin / 0.670
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.670
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.670
3bnk FMNFlavoredoxin / 0.669
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.669
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.668
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.668
2h8x FMNXenA / 0.667
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.666
2v5u FMNFlavodoxin / 0.666
4yao FMNNADPH--cytochrome P450 reductase / 0.666
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.665
2bf4 FMNNADPH--cytochrome P450 reductase / 0.665
2dvl FADAcyl-CoA dehydrogenase / 0.665
2w5u FMNFlavodoxin / 0.664
4bmp FMNProtein NrdI / 0.663
3w8w FADPutative FAD-dependent oxygenase EncM / 0.662
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.660
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.659
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.658
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.657
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.657
4fx2 FMNFlavodoxin / 0.657
2bn4 FMNNADPH--cytochrome P450 reductase / 0.654
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.654
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.653
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.653
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.652
4m9a FDAAcyl-CoA dehydrogenase / 0.651
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.651
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.650