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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jkv NAP 6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 1.393
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.835
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.821
2iyp NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.793
2ev9 NAPShikimate dehydrogenase (NADP(+)) / 0.791
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.759
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.751
3dtt NAPNADP oxidoreductase, coenzyme F420-dependent / 0.738
3zhb NAPPutative dehydrogenase / 0.731
1vi2 NADQuinate/shikimate dehydrogenase / 0.706
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.706
1oaa NAPSepiapterin reductase 1.1.1.153 0.705
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.705
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.700
5a9s NAPPutative dehydrogenase / 0.698
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.696
4xr9 NADCalS8 / 0.696
4kwh NAPReductase homolog / 0.694
3tri NAPPyrroline-5-carboxylate reductase / 0.693
3t4e NADQuinate/shikimate dehydrogenase / 0.692
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.691
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.689
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.685
4j7u NAPSepiapterin reductase 1.1.1.153 0.683
1qmg APXKetol-acid reductoisomerase, chloroplastic 1.1.1.86 0.681
3dk4 NDPGlutathione reductase, mitochondrial 1.8.1.7 0.681
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.681
4u7w NDPMxaA / 0.681
3hwr NDP2-dehydropantoate 2-reductase / 0.678
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.676
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.675
2wba NDPTrypanothione reductase 1.8.1.12 0.673
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.673
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.671
3h2s NDPPutative NADH-flavin reductase / 0.671
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.670
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.670
4hxy NDPPlm1 / 0.669
3cow 52HPantothenate synthetase 6.3.2.1 0.667
3iup NDPPossible NADH oxidoreductase / 0.667
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.667
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.667
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.666
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.666
1o9b NAIQuinate/shikimate dehydrogenase / 0.665
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.665
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.665
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.664
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.664
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.663
3tnl NADShikimate dehydrogenase (NADP(+)) / 0.663
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.661
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.660
3h3f NAIL-lactate dehydrogenase A chain 1.1.1.27 0.660
3m2t NADProbable dehydrogenase / 0.660
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
1e5q NDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming] 1.5.1.10 0.658
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.657
3c1o NAPEugenol synthase / 0.656
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.656
4hwk NAPSepiapterin reductase 1.1.1.153 0.656
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.655
1f9a ATPNicotinamide-nucleotide adenylyltransferase / 0.654
4ejm NAPPutative zinc-binding dehydrogenase / 0.654
2c29 NAPDihydroflavonol 4-reductase / 0.653
1u8x NADMaltose-6'-phosphate glucosidase 3.2.1.122 0.652
2g5c NADPrephenate dehydrogenase / 0.652
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.652
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.651
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.650
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.650
3a1n NADNDP-sugar epimerase / 0.650