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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hrc CHD Ferrochelatase, mitochondrial 4.99.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 1.086
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.859
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 0.857
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.854
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.834
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.727
3w5t LHPVitamin D3 receptor / 0.718
4q0a 4OAVitamin D3 receptor A / 0.717
3w5r LOAVitamin D3 receptor / 0.697
1tw4 CHDFatty acid-binding protein, liver / 0.687
2jn3 JN3Fatty acid-binding protein, liver / 0.684
3gyt DL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.680
1sr7 MOFProgesterone receptor / 0.677
4x86 CPSLarge proline-rich protein BAG6 / 0.676
4x86 CPSUbiquitin-like protein 4A / 0.676
3w5p 4OAVitamin D3 receptor / 0.674
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.669
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.666
3gki CLRNiemann-Pick C1 protein / 0.666
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4a84 DXCMajor pollen allergen Bet v 1-A / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2b1z 17MEstrogen receptor / 0.658
4j6d TESCytochrome P450 monooxygenase / 0.656
1s0x C3SNuclear receptor ROR-alpha / 0.655
4c49 HCYCorticosteroid-binding globulin / 0.655
1eio GCHGastrotropin / 0.654
4jbt ASDCytochrome P450 monooxygenase / 0.654
1n83 CLRNuclear receptor ROR-alpha / 0.652
2a3i C0RMineralocorticoid receptor / 0.652
2abi 1CAMineralocorticoid receptor / 0.652
2mm3 GCHGastrotropin / 0.651
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.650