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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4x86

1.850 Å

X-ray

2014-12-10

Molecular Function:
Binding Site :

Uniprot Annotation

Name:Large proline-rich protein BAG6Ubiquitin-like protein 4A
ID:BAG6_HUMANUBL4A_HUMAN
AC:P46379P11441
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A40 %
B60 %


Ligand binding site composition:

B-Factor:72.604
Number of residues:15
Including
Standard Amino Acids: 15
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.694320.625

% Hydrophobic% Polar
67.3732.63
According to VolSite

Ligand :
4x86_1 Structure
HET Code: CPS
Formula: C32H58N2O7S
Molecular weight: 614.877 g/mol
DrugBank ID: -
Buried Surface Area:23.06 %
Polar Surface area: 155.36 Å2
Number of
H-Bond Acceptors: 7
H-Bond Donors: 4
Rings: 4
Aromatic rings: 0
Anionic atoms: 1
Cationic atoms: 1
Rule of Five Violation: 1
Rotatable Bonds: 12

Mass center Coordinates

XYZ
-86.6767148.175-10.4483


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C10CG2ILE- 1353.960Hydrophobic
C20CG2ILE- 1354.470Hydrophobic
C10CD1LEU- 1384.230Hydrophobic
C11CD1LEU- 1383.950Hydrophobic
C7CBALA- 1394.020Hydrophobic
C16CE1PHE- 1423.60Hydrophobic
C17CD1PHE- 1424.160Hydrophobic
C11CD2LEU- 10624.40Hydrophobic
O2NH1ARG- 11003.02167.41H-Bond
(Protein Donor)
C13CGARG- 11003.530Hydrophobic
C12CBARG- 11043.790Hydrophobic
C3CGARG- 11044.190Hydrophobic
C3CD1ILE- 11074.20Hydrophobic
C10CG2ILE- 11073.990Hydrophobic
C11CD1ILE- 11073.930Hydrophobic
C21CGGLN- 11084.030Hydrophobic