1.850 Å
X-ray
2014-12-10
Name: | Large proline-rich protein BAG6 | Ubiquitin-like protein 4A |
---|---|---|
ID: | BAG6_HUMAN | UBL4A_HUMAN |
AC: | P46379 | P11441 |
Organism: | Homo sapiens | |
Reign: | Eukaryota | |
TaxID: | 9606 | |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 40 % |
B | 60 % |
B-Factor: | 72.604 |
---|---|
Number of residues: | 15 |
Including | |
Standard Amino Acids: | 15 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.694 | 320.625 |
% Hydrophobic | % Polar |
---|---|
67.37 | 32.63 |
According to VolSite |
HET Code: | CPS |
---|---|
Formula: | C32H58N2O7S |
Molecular weight: | 614.877 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 23.06 % |
Polar Surface area: | 155.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 4 |
Rings: | 4 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 12 |
X | Y | Z |
---|---|---|
-86.6767 | 148.175 | -10.4483 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CG2 | ILE- 135 | 3.96 | 0 | Hydrophobic |
C20 | CG2 | ILE- 135 | 4.47 | 0 | Hydrophobic |
C10 | CD1 | LEU- 138 | 4.23 | 0 | Hydrophobic |
C11 | CD1 | LEU- 138 | 3.95 | 0 | Hydrophobic |
C7 | CB | ALA- 139 | 4.02 | 0 | Hydrophobic |
C16 | CE1 | PHE- 142 | 3.6 | 0 | Hydrophobic |
C17 | CD1 | PHE- 142 | 4.16 | 0 | Hydrophobic |
C11 | CD2 | LEU- 1062 | 4.4 | 0 | Hydrophobic |
O2 | NH1 | ARG- 1100 | 3.02 | 167.41 | H-Bond (Protein Donor) |
C13 | CG | ARG- 1100 | 3.53 | 0 | Hydrophobic |
C12 | CB | ARG- 1104 | 3.79 | 0 | Hydrophobic |
C3 | CG | ARG- 1104 | 4.19 | 0 | Hydrophobic |
C3 | CD1 | ILE- 1107 | 4.2 | 0 | Hydrophobic |
C10 | CG2 | ILE- 1107 | 3.99 | 0 | Hydrophobic |
C11 | CD1 | ILE- 1107 | 3.93 | 0 | Hydrophobic |
C21 | CG | GLN- 1108 | 4.03 | 0 | Hydrophobic |