sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 1.611 | |
| 1efv | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 1.495 | |
| 1efp | FAD | Electron transfer flavoprotein subunit alpha | / | 1.232 | |
| 3cls | FAD | Electron transfer flavoprotein subunit alpha | / | 1.159 | |
| 3clt | FAD | Electron transfer flavoprotein subunit alpha | / | 1.153 | |
| 1o97 | FAD | Electron transfer flavoprotein subunit alpha | / | 1.135 | |
| 3clu | FAD | Electron transfer flavoprotein subunit alpha | / | 1.133 | |
| 3clr | FAD | Electron transfer flavoprotein subunit alpha | / | 1.130 | |
| 1jsc | FAD | Acetolactate synthase catalytic subunit, mitochondrial | 2.2.1.6 | 0.779 | |
| 2pr5 | FMN | Blue-light photoreceptor | / | 0.746 | |
| 3e9y | FAB | Acetolactate synthase, chloroplastic | 2.2.1.6 | 0.743 | |
| 2z6c | FMN | Phototropin-1 | 2.7.11.1 | 0.741 | |
| 1x0p | FAD | Tll0078 protein | / | 0.739 | |
| 4hia | FMN | LOV protein | / | 0.734 | |
| 5j4e | FMN | Sensory box protein | / | 0.730 | |
| 3gg1 | FMN | Uncharacterized protein | / | 0.729 | |
| 2i51 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.720 | |
| 4hmx | FMN | Pyridoxamine 5'-phosphate oxidase | / | 0.719 | |
| 4kuo | RBF | Putative blue-light photoreceptor | / | 0.714 | |
| 5ahk | FAD | Acetolactate synthase II, large subunit | / | 0.712 | |
| 3ea4 | FAB | Acetolactate synthase, chloroplastic | 2.2.1.6 | 0.709 | |
| 4hmw | FMN | Pyridoxamine 5'-phosphate oxidase | / | 0.708 | |
| 2iyi | FMN | AppA, antirepressor of ppsR, sensor of blue light | / | 0.704 | |
| 3gg0 | FMN | Uncharacterized protein | / | 0.704 | |
| 1zmd | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.701 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.700 | |
| 2dji | FAD | Pyruvate oxidase | / | 0.695 | |
| 1gaq | FAD | Ferredoxin | / | 0.693 | |
| 2ign | FAD | Pyranose 2-oxidase | / | 0.691 | |
| 2pan | FAD | Glyoxylate carboligase | 4.1.1.47 | 0.691 | |
| 1v5e | FAD | Pyruvate oxidase | / | 0.690 | |
| 4b4d | FAD | Ferredoxin-NADP reductase | / | 0.690 | |
| 3lsh | FAD | Pyranose 2-oxidase | / | 0.688 | |
| 2bn4 | FAD | NADPH--cytochrome P450 reductase | / | 0.684 | |
| 5djt | FMN | NPH1-2 | / | 0.684 | |
| 3nyc | FAD | FAD-dependent catabolic D-arginine dehydrogenase DauA | / | 0.682 | |
| 3jqr | FAD | Ferredoxin--NADP reductase, apicoplast | / | 0.681 | |
| 1n07 | FMN | Riboflavin kinase | 2.7.1.26 | 0.679 | |
| 2e48 | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.679 | |
| 5j3w | FMN | Sensory box protein | / | 0.679 | |
| 1vfr | FMN | Major NAD(P)H-flavin oxidoreductase | 1.6.99 | 0.678 | |
| 4y9l | FAD | Acyl-CoA dehydrogenase family member 11 | / | 0.678 | |
| 1wv4 | FMN | Pyridoxine/pyridoxamine 5'-phosphate oxidase | / | 0.676 | |
| 4yus | FMN | Family 3 adenylate cyclase | / | 0.676 | |
| 3pl8 | FAD | Pyranose 2-oxidase | / | 0.675 | |
| 1n9n | FMN | Putative blue light receptor | / | 0.673 | |
| 3k4c | FAD | Pyranose 2-oxidase | / | 0.672 | |
| 1pox | FAD | Pyruvate oxidase | 1.2.3.3 | 0.670 | |
| 2hfn | FMN | Activator of photopigment and puc expression | / | 0.669 | |
| 1pow | FAD | Pyruvate oxidase | 1.2.3.3 | 0.667 | |
| 3gfy | FMN | Uncharacterized protein | / | 0.667 | |
| 1t6y | FMN | Riboflavin biosynthesis protein | / | 0.666 | |
| 2ok8 | FAD | Ferredoxin--NADP reductase, apicoplast | / | 0.665 | |
| 4gap | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.665 | |
| 4yac | NAI | C alpha-dehydrogenase | / | 0.665 | |
| 3lsm | SFD | Pyranose 2-oxidase | / | 0.664 | |
| 4af7 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.664 | |
| 4uaj | FAD | Na(+)-translocating NADH-quinone reductase subunit F | / | 0.662 | |
| 1ty9 | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 0.661 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.661 | |
| 4hnb | FMN | LOV protein | / | 0.661 | |
| 2fzn | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.660 | |
| 2pia | FMN | Phthalate dioxygenase reductase | / | 0.659 | |
| 2o12 | FMN | Chorismate synthase | / | 0.657 | |
| 2pd7 | FAD | Vivid PAS protein VVD | / | 0.657 | |
| 3ou7 | SAM | SAM-dependent methyltransferase | / | 0.657 | |
| 3qft | FAD | NADPH--cytochrome P450 reductase | / | 0.657 | |
| 5efw | FMN | NPH1-1 | / | 0.657 | |
| 3ou2 | SAH | SAM-dependent methyltransferase | / | 0.655 | |
| 3ou6 | SAM | SAM-dependent methyltransferase | / | 0.655 | |
| 3qfc | FAD | NADPH--cytochrome P450 reductase | / | 0.655 | |
| 1t6z | RBF | Riboflavin biosynthesis protein | / | 0.654 | |
| 4c3x | FAD | 3-ketosteroid dehydrogenase | / | 0.654 | |
| 3cox | FAD | Cholesterol oxidase | 1.1.3.6 | 0.653 | |
| 3djl | FAD | Putative acyl-CoA dehydrogenase AidB | 1.3.99 | 0.653 | |
| 2bf4 | FAD | NADPH--cytochrome P450 reductase | / | 0.652 | |
| 4d5g | FAD | Cyclohexane-1,2-dione hydrolase | 3.7.1.11 | 0.652 | |
| 2vnh | FAD | NADPH:ferredoxin reductase | / | 0.651 | |
| 1qg0 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.650 | |
| 2ba9 | FAD | Putative aminooxidase | / | 0.650 | |
| 2hsa | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.650 | |
| 3ge6 | FMN | Nitroreductase | / | 0.650 | |
| 4hms | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 0.650 |