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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yrc CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.815
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.811
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.807
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.807
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.806
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.804
3fwf CAMCamphor 5-monooxygenase 1.14.15.1 0.799
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.792
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.788
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.787
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.787
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.787
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.787
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.785
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.785
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.784
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.778
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.773
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.765
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.754
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.747
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.727
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.726
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.711
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.711
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.707
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.669
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.668
3lxi CAMCytochrome P450 / 0.666
4c9p CAMCytochrome P450 / 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.651