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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v59 NAD Dihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1v59 NADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.748
3g07 SAM7SK snRNA methylphosphate capping enzyme 2.1.1 0.682
4xcx SAHSmall RNA 2'-O-methyltransferase / 0.681
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.666
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.665
1ori SAHProtein arginine N-methyltransferase 1 / 0.664
1d2h SAHGlycine N-methyltransferase 2.1.1.20 0.663
4eki 0QKHistone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.663
4gbe SAHDNA adenine methylase 2.1.1.72 0.663
7mht SAHModification methylase HhaI 2.1.1.37 0.663
3a26 MTAtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.662
1eg2 MTAModification methylase RsrI 2.1.1.72 0.660
3grv ADNProbable ribosomal RNA small subunit methyltransferase A / 0.660
1get FADGlutathione reductase 1.8.1.7 0.659
2eq7 NADDihydrolipoyl dehydrogenase / 0.659
3grr SAHProbable ribosomal RNA small subunit methyltransferase A / 0.659
4wec NADShort chain dehydrogenase / 0.659
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.657
3hvi 619Catechol O-methyltransferase 2.1.1.6 0.656
3mht SAHModification methylase HhaI 2.1.1.37 0.656
9mht SAHModification methylase HhaI 2.1.1.37 0.656
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.655
2c7q SAHModification methylase HhaI 2.1.1.37 0.655
2hqm FADGlutathione reductase 1.8.1.7 0.655
2q0l FADThioredoxin reductase 1.8.1.9 0.655
3ict ADPCoenzyme A disulfide reductase / 0.655
4m37 SAHProtein arginine N-methyltransferase 7 2.1.1 0.655
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.654
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.654
3g8a SAHRibosomal RNA small subunit methyltransferase G / 0.654
4d03 FADPhenylacetone monooxygenase 1.14.13.92 0.654
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.654
4nec SAHPutative SAM-dependent methyltransferase / 0.654
1boo SAHModification methylase PvuII 2.1.1.113 0.653
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.653
1zmc NADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
3hvk 719Catechol O-methyltransferase 2.1.1.6 0.653
3oe4 610Catechol O-methyltransferase 2.1.1.6 0.653
1p1c SAHGuanidinoacetate N-methyltransferase 2.1.1.2 0.652
1qo8 FADFumarate reductase flavoprotein subunit / 0.652
2yg6 FADPutrescine oxidase / 0.652
3atr FDAConserved Archaeal protein / 0.652
3bi5 FADPolyamine oxidase FMS1 / 0.652
3k30 ADPHistamine dehydrogenase / 0.652
3swr SFGDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.652
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
4nzh FADL-ornithine N(5)-monooxygenase / 0.652
2ca0 PXICytochrome P450 monooxygenase PikC / 0.651
3duw SAHO-methyltransferase, putative / 0.651
4fn4 NADShort chain dehydrogenase / 0.651
4x7y SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.651
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.650
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.650
5dwq SFGHistone-arginine methyltransferase CARM1 / 0.650