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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ty9 FMN Phenazine biosynthesis protein PhzG 1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 1.343
4hms FMNPhenazine biosynthesis protein PhzG 1.4 1.311
4hmw FMNPyridoxamine 5'-phosphate oxidase / 1.085
4hmx FMNPyridoxamine 5'-phosphate oxidase / 1.051
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.926
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.890
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.843
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.778
2hq9 FADMll6688 protein / 0.761
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.745
3r5y F42Uncharacterized protein / 0.732
2pia FMNPhthalate dioxygenase reductase / 0.730
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.727
2qdx FADFerredoxin--NADP+ reductase / 0.727
3e4v FMNUncharacterized protein / 0.723
2ptf FMNUncharacterized protein MTH_863 / 0.714
3fpk FADFerredoxin-NADP reductase / 0.714
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.709
2nr4 FMNConserved protein / 0.708
3r5z F42Uncharacterized protein / 0.707
2vnj FADNADPH:ferredoxin reductase / 0.703
2vnk FADNADPH:ferredoxin reductase / 0.702
2iml FMNUncharacterized protein / 0.701
4b4d FADFerredoxin-NADP reductase / 0.698
1j9z FADNADPH--cytochrome P450 reductase / 0.697
2z6c FMNPhototropin-1 2.7.11.1 0.694
4eep FMNPhototropin-2 2.7.11.1 0.693
5efw FMNNPH1-1 / 0.690
1usc FMNMonooxygenase / 0.689
4fk8 FADFerredoxin--NADP reductase / 0.689
3a6q FMNFMN-binding protein / 0.686
3a6r FMNFMN-binding protein / 0.686
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.686
3vy2 FMNFMN-binding protein / 0.686
1gaq FADFerredoxin / 0.682
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.682
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.681
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.680
4f07 FADStyrene monooxygenase component 2 / 0.680
2dji FADPyruvate oxidase / 0.679
1wlk FMNFMN-binding protein / 0.676
2bgj FADNADPH:ferredoxin reductase / 0.676
3in6 FMNUncharacterized protein / 0.675
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.674
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.673
1pkv RBFRiboflavin synthase 2.5.1.9 0.672
1pox FADPyruvate oxidase 1.2.3.3 0.671
4hia FMNLOV protein / 0.671
1wli FMNFMN-binding protein / 0.670
3a20 FMNFMN-binding protein / 0.670
4hj6 FMNLOV protein / 0.670
1a8p FADFerredoxin--NADP reductase / 0.669
3awh FMNFMN-binding protein / 0.669
3r5w F42Deazaflavin-dependent nitroreductase / 0.669
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.668
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.668
4l82 FMNUncharacterized protein / 0.668
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.667
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.667
4rhe FMNFlavin prenyltransferase UbiX / 0.667
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.666
4eer FMNPhototropin-2 2.7.11.1 0.666
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.665
1v5e FADPyruvate oxidase / 0.663
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.662
1rz0 FADPhenol 2-hydroxylase component B / 0.662
2pr5 FMNBlue-light photoreceptor / 0.662
4k1x FADNADPH:ferredoxin reductase / 0.662
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.661
2eix FADNADH-cytochrome b5 reductase / 0.661
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.660
3a3b RBFLumazine protein / 0.660
3vy5 FMNFMN-binding protein / 0.660
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.660
4hj3 FMNLOV protein / 0.660
1n9l FMNPutative blue light receptor / 0.659
3amf FMNFMN-binding protein / 0.659
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.657
2rc5 FADFerredoxin--NADP reductase / 0.655
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.654
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.654
4dxd 9PCCell division protein FtsZ / 0.654
1cc2 FADCholesterol oxidase 1.1.3.6 0.653
3p7n FMNLight-activated DNA-binding protein EL222 / 0.652
5cho FADFlavin reductase / 0.651