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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ryd NDP Glucose--fructose oxidoreductase 1.1.99.28

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 1.444
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 1.289
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 1.231
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 1.224
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 1.215
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 1.214
5a03 NDPGlucose-fructose oxidoreductase / 1.155
5a04 NDPGlucose-fructose oxidoreductase / 1.138
5a05 NDPGlucose-fructose oxidoreductase / 1.123
5a02 NAPGlucose-fructose oxidoreductase / 1.111
5a06 NDPGlucose-fructose oxidoreductase / 1.055
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 1.008
1rye NDPGlucose--fructose oxidoreductase 1.1.99.28 0.943
1zh8 NAPUncharacterized protein / 0.820
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.808
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.796
2glx NDP1,5-anhydro-D-fructose reductase / 0.762
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.749
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.743
3rbv NAPSugar 3-ketoreductase / 0.721
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.697
3cea NADMyo-inositol 2-dehydrogenase-like (Promiscuous) / 0.691
3q2k NAIProbable oxidoreductase / 0.687
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.684
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.681
3m2t NADProbable dehydrogenase / 0.679
4oaq NDPR-specific carbonyl reductase / 0.675
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.674
2h63 NAPBiliverdin reductase A 1.3.1.24 0.674
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.671
3vc1 SAHGeranyl diphosphate 2-C-methyltransferase 2.1.1.255 0.670
5bsg NAPPyrroline-5-carboxylate reductase / 0.666
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.665
1yqd NAPSinapyl alcohol dehydrogenase / 0.664
1a71 NADAlcohol dehydrogenase E chain 1.1.1.1 0.663
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5cdg NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5cds NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.662
4nfh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.662
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
3oq6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
4dwv NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
1f3l SAHProtein arginine N-methyltransferase 3 / 0.659
2f1k NAPPrephenate dehydrogenase / 0.659
3ket NADRedox-sensing transcriptional repressor Rex / 0.658
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.656
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.656
3x2f NAIAdenosylhomocysteinase / 0.655
3ec7 NADInositol 2-dehydrogenase / 0.653
3adp NAILambda-crystallin 1.1.1.45 0.652
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.651