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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1r8b ATP CCA-adding enzyme 2.7.7.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1r8b ATPCCA-adding enzyme 2.7.7.72 0.830
1r8c UTPCCA-adding enzyme 2.7.7.72 0.793
1r89 CTPCCA-adding enzyme 2.7.7.72 0.792
2q66 ATPPoly(A) polymerase 2.7.7.19 0.745
4xj3 GTPCyclic GMP-AMP synthase / 0.745
1jsz NDMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2.1.1.57 0.744
4xj4 3ATCyclic GMP-AMP synthase / 0.743
4u03 GTPCyclic GMP-AMP synthase / 0.738
3lzj CTPDNA-directed DNA polymerase / 0.702
4dtj TTPDNA-directed DNA polymerase / 0.702
4dtp DGTDNA-directed DNA polymerase / 0.700
4dtx TTPDNA-directed DNA polymerase / 0.700
3ne6 DCPDNA-directed DNA polymerase / 0.699
4fjj TTPDNA-directed DNA polymerase / 0.699
4fj5 DTPDNA-directed DNA polymerase / 0.698
4m42 ATPDNA-directed DNA polymerase / 0.698
2q0d ATPPoly(A) polymerase, putative / 0.696
3hiy UTPUncharacterized protein / 0.695
4fjm DCPDNA-directed DNA polymerase / 0.688
4fk4 DGTDNA-directed DNA polymerase / 0.688
4m3t ATPDNA-directed DNA polymerase / 0.687
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.684
2q0c CTPPoly(A) polymerase, putative / 0.671
3sup DCPDNA-directed DNA polymerase / 0.669
4lt6 3ATPoly(A) polymerase gamma 2.7.7.19 0.668
2q0f UTPPoly(A) polymerase, putative / 0.667
1cjv DADAdenylate cyclase type 2 / 0.664
1cjv DADAdenylate cyclase type 5 / 0.664
2b56 UTPRNA editing complex protein MP57 / 0.664
2dr8 CTPCCA-adding enzyme 2.7.7.72 0.664
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.664
3q23 G2PVirion DNA-directed RNA polymerase / 0.664
4m3x ATPDNA-directed DNA polymerase / 0.663
3au2 DGTDNA polymerase beta family (X family) / 0.654
3qc9 ADPRhodopsin kinase / 0.653
1i7c MGBS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.652
3ova APCCCA-adding enzyme 2.7.7.72 0.652
5a2w AGSMitochondrial poly(A) polymerase / 0.652
4fvq ATPTyrosine-protein kinase JAK2 / 0.651
4txz G2PCyclic GMP-AMP synthase / 0.650