2.500 Å
X-ray
2015-05-26
| Name: | Mitochondrial poly(A) polymerase |
|---|---|
| ID: | F1NBW0_CHICK |
| AC: | F1NBW0 |
| Organism: | Gallus gallus |
| Reign: | Eukaryota |
| TaxID: | 9031 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 66.549 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.857 | 1049.625 |
| % Hydrophobic | % Polar |
|---|---|
| 42.77 | 57.23 |
| According to VolSite | |

| HET Code: | AGS |
|---|---|
| Formula: | C10H14N5O12P3S |
| Molecular weight: | 521.231 g/mol |
| DrugBank ID: | DB02930 |
| Buried Surface Area: | 43.58 % |
| Polar Surface area: | 329.24 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 36.0843 | 2.16926 | 0.385387 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CE2 | PHE- 224 | 3.54 | 0 | Hydrophobic |
| O2B | N | SER- 226 | 3 | 165.71 | H-Bond (Protein Donor) |
| C5' | CB | ASP- 239 | 4.28 | 0 | Hydrophobic |
| C1' | CB | ALA- 327 | 4.38 | 0 | Hydrophobic |
| O3G | ND2 | ASN- 371 | 3.41 | 154.3 | H-Bond (Protein Donor) |
| C3' | CD1 | PHE- 372 | 4.03 | 0 | Hydrophobic |
| C2' | CE1 | PHE- 372 | 3.83 | 0 | Hydrophobic |
| O2G | MG | MG- 1529 | 2.35 | 0 | Metal Acceptor |
| O2B | MG | MG- 1529 | 2.09 | 0 | Metal Acceptor |
| O1A | MG | MG- 1529 | 2.66 | 0 | Metal Acceptor |