2.500 Å
X-ray
2015-05-26
Name: | Mitochondrial poly(A) polymerase |
---|---|
ID: | F1NBW0_CHICK |
AC: | F1NBW0 |
Organism: | Gallus gallus |
Reign: | Eukaryota |
TaxID: | 9031 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 66.549 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.857 | 1049.625 |
% Hydrophobic | % Polar |
---|---|
42.77 | 57.23 |
According to VolSite |
HET Code: | AGS |
---|---|
Formula: | C10H14N5O12P3S |
Molecular weight: | 521.231 g/mol |
DrugBank ID: | DB02930 |
Buried Surface Area: | 43.58 % |
Polar Surface area: | 329.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
36.0843 | 2.16926 | 0.385387 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CE2 | PHE- 224 | 3.54 | 0 | Hydrophobic |
O2B | N | SER- 226 | 3 | 165.71 | H-Bond (Protein Donor) |
C5' | CB | ASP- 239 | 4.28 | 0 | Hydrophobic |
C1' | CB | ALA- 327 | 4.38 | 0 | Hydrophobic |
O3G | ND2 | ASN- 371 | 3.41 | 154.3 | H-Bond (Protein Donor) |
C3' | CD1 | PHE- 372 | 4.03 | 0 | Hydrophobic |
C2' | CE1 | PHE- 372 | 3.83 | 0 | Hydrophobic |
O2G | MG | MG- 1529 | 2.35 | 0 | Metal Acceptor |
O2B | MG | MG- 1529 | 2.09 | 0 | Metal Acceptor |
O1A | MG | MG- 1529 | 2.66 | 0 | Metal Acceptor |