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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lrk UD1 UDP-glucose 4-epimerase 5.1.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 1.104
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.876
1i3l GDUUDP-glucose 4-epimerase / 0.854
1i3n UD1UDP-glucose 4-epimerase / 0.850
1i3m UD1UDP-glucose 4-epimerase / 0.838
1hzj UD1UDP-glucose 4-epimerase / 0.795
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.780
1ek6 UPGUDP-glucose 4-epimerase / 0.778
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.774
1i3k UPGUDP-glucose 4-epimerase / 0.774
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.760
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 0.756
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.756
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.755
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.755
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.748
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.748
3enk UPGUDP-glucose 4-epimerase / 0.744
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.736
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.733
4zrn UPGUDP-glucose 4-epimerase, putative / 0.691
1sb8 UD2WbpP / 0.666
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.650