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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lqa NDP Protein tas

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lqa NDPProtein tas / 1.433
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.962
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.946
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.938
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.932
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.923
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 0.882
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.874
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 0.873
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.856
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 0.852
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.819
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.814
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.805
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.751
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.751
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.745
1ah4 NAPAldose reductase 1.1.1.21 0.736
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.731
1ads NAPAldose reductase 1.1.1.21 0.728
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.728
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.724
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.719
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.718
1pz1 NAPGeneral stress protein 69 / 0.717
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.717
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.711
1c9w NAPAldose reductase-related protein 2 / 0.707
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.705
2hdj NDPAldo-keto reductase family 1 member C2 / 0.703
4jtq NAPAldo-keto reductase family 1 member C2 / 0.701
2he5 NDPAldo-keto reductase family 1 member C21 1.1.1 0.697
4l1x NAPAldo-keto reductase family 1 member C2 / 0.697
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.696
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.695
1s1p NAPAldo-keto reductase family 1 member C3 / 0.694
3q65 NAPAldose reductase 1.1.1.21 0.693
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.689
2pfh NDPAldose reductase 1.1.1.21 0.688
1s1r NAPAldo-keto reductase family 1 member C3 / 0.687
2vdg NDPAldose reductase 1.1.1.21 0.686
1z9a NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.685
2acs NAPAldose reductase 1.1.1.21 0.683
3g1r NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.682
2acq NAPAldose reductase 1.1.1.21 0.681
3qkz NAPAldose reductase-related protein 1 1.1.1.21 0.677
3q67 NAPAldose reductase 1.1.1.21 0.674
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.672
4g5d NDPProstaglandin F synthase 1.1.1.188 0.671
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 0.669
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.666
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.664
2pev NDPAldose reductase 1.1.1.21 0.663
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.662
3uzw NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.662
1og6 NAPOxidoreductase YdhF 1 0.657
2iq0 NAPAldose reductase 1.1.1.21 0.655
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.655