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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kvt UPG UDP-glucose 4-epimerase 5.1.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 1.220
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 1.151
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 1.075
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 1.073
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 1.050
1ek6 UPGUDP-glucose 4-epimerase / 1.045
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.979
1i3k UPGUDP-glucose 4-epimerase / 0.973
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.971
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.956
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.929
1i3m UD1UDP-glucose 4-epimerase / 0.920
1i3n UD1UDP-glucose 4-epimerase / 0.884
1i3l GDUUDP-glucose 4-epimerase / 0.882
1hzj UD1UDP-glucose 4-epimerase / 0.861
3enk UPGUDP-glucose 4-epimerase / 0.840
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.836
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.818
1z45 UPGBifunctional protein GAL10 5.1.3.2 0.777
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.760
4zrn UPGUDP-glucose 4-epimerase, putative / 0.755
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.739
1sb8 UD2WbpP / 0.733
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.711
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.671
2gn9 UPGUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.666
3lu1 UD2UDP-N-acetylglucosamine 4-epimerase / 0.661