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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1id0 ANP Sensor protein PhoQ 2.7.13.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1id0 ANPSensor protein PhoQ 2.7.13.3 1.208
4bix ADPSensor histidine kinase CpxA / 0.731
1i58 ADPChemotaxis protein CheA 2.7.13.3 0.711
3a0t ADPSensor histidine kinase / 0.711
2pml ANPUncharacterized protein / 0.697
1z59 ADPType 2 DNA topoisomerase 6 subunit B / 0.696
4biz ADPSensor histidine kinase CpxA / 0.693
2o1o RISPutative farnesyl pyrophosphate synthase / 0.691
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.688
1ei1 ANPDNA gyrase subunit B / 0.686
4prx ADPDNA gyrase subunit B / 0.681
3sl2 ATPSensor histidine kinase WalK / 0.680
4prv ADPDNA gyrase subunit B / 0.680
1gjv AGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial 2.7.11.4 0.674
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.674
4pl9 ADPEthylene receptor 1 / 0.674
4gt8 ADPSensor protein VraS 2.7.13.3 0.672
3d2r ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.668
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.668
3hko ANPCalcium/calmodulin-dependent protein kinase with a kinase domain and 2 calmodulin-like EF hands / 0.667
2bu8 ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.664
4xcl AGSHeat shock cognate 90 kDa protein / 0.663
2ejk SAHDiphthine synthase / 0.662
3t2s AGSHeat shock protein HSP 90-alpha / 0.661
4oac ADPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.661
2p5f SAHDiphthine synthase / 0.660
2pb4 SAHDiphthine synthase / 0.660
2dv5 SAHDiphthine synthase / 0.658
2eu8 AP5Adenylate kinase / 0.658
2owg SAHDiphthine synthase / 0.658
2pb5 SAHDiphthine synthase / 0.658
2en5 SAHDiphthine synthase / 0.657
2owv SAHDiphthine synthase / 0.657
2zdy ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.657
1i59 ADPChemotaxis protein CheA 2.7.13.3 0.656
4iir ANPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.656
1oe0 TTPDeoxynucleoside kinase / 0.655
2dv3 SAHDiphthine synthase / 0.655
2e8s SAHDiphthine synthase / 0.655
2ek4 SAHDiphthine synthase / 0.655
2pcg SAHDiphthine synthase / 0.655
2egs SAHDiphthine synthase / 0.654
2ek2 SAHDiphthine synthase / 0.654
2pch SAHDiphthine synthase / 0.654
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.654
1jm6 ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.653
2ed5 SAHDiphthine synthase / 0.653
2wgh DTPRibonucleoside-diphosphate reductase large subunit 1.17.4.1 0.653
3fmo ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.653
2bu2 ATP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.652
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.651
1pvg ANPDNA topoisomerase 2 5.99.1.3 0.650