1.800 Å
X-ray
2009-05-25
Name: | Calcium/calmodulin-dependent protein kinase with a kinase domain and 2 calmodulin-like EF hands |
---|---|
ID: | Q5CZ29_CRYPI |
AC: | Q5CZ29 |
Organism: | Cryptosporidium parvum |
Reign: | Eukaryota |
TaxID: | 353152 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.100 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.717 | 452.250 |
% Hydrophobic | % Polar |
---|---|
55.97 | 44.03 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 48.08 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
12.5756 | -22.6232 | -27.1896 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | SER- 20 | 2.8 | 170.21 | H-Bond (Protein Donor) |
O1B | OG | SER- 20 | 3.47 | 141.15 | H-Bond (Protein Donor) |
C5' | CG2 | VAL- 24 | 4.47 | 0 | Hydrophobic |
C1' | CG2 | VAL- 24 | 4.32 | 0 | Hydrophobic |
O1A | NZ | LYS- 39 | 3.48 | 154.94 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 39 | 3.48 | 0 | Ionic (Protein Cationic) |
N6 | O | GLU- 90 | 2.76 | 159.74 | H-Bond (Ligand Donor) |
N1 | N | CYS- 92 | 3 | 164.82 | H-Bond (Protein Donor) |
O3' | NE2 | HIS- 96 | 2.86 | 161.87 | H-Bond (Ligand Donor) |
C2' | CD1 | LEU- 182 | 4.35 | 0 | Hydrophobic |
O2B | MG | MG- 330 | 2.4 | 0 | Metal Acceptor |
O1A | MG | MG- 330 | 1.88 | 0 | Metal Acceptor |