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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i8z INL Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.876
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.781
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.775
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.757
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.755
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.754
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.751
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.743
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.733
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.730
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.729
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.728
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.725
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.725
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.721
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.721
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.720
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.719
4uov AZMCarbonate dehydratase / 0.719
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.718
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.717
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.716
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.716
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.715
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.713
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.713
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.712
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.711
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.711
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.711
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.707
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.707
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.707
4xiw AZMCarbonic anhydrase, alpha type / 0.705
1okm SABCarbonic anhydrase 2 4.2.1.1 0.703
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.703
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.702
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.702
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.702
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.699
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.699
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.698
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.698
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.698
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.697
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.697
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.696
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.696
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.695
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.694
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.694
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.694
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.694
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.693
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.691
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.690
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.689
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.686
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.685
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.684
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.684
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.683
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.681
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.680
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.678
1okn STBCarbonic anhydrase 2 4.2.1.1 0.677
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.673
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.672
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.670
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.669
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.669
3myq E27Carbonic anhydrase 2 4.2.1.1 0.668
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.666
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.665
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.664
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.663
3mho J43Carbonic anhydrase 2 4.2.1.1 0.662
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.661
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.660
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.658
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.655
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.651
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.650